FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9706, 338 aa 1>>>pF1KB9706 338 - 338 aa - 338 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3087+/-0.00103; mu= 0.4383+/- 0.063 mean_var=544.7761+/-110.757, 0's: 0 Z-trim(118.2): 75 B-trim: 0 in 0/55 Lambda= 0.054950 statistics sampled from 19052 (19127) to 19052 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.588), width: 16 Scan time: 2.650 The best scores are: opt bits E(32554) CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2 ( 338) 2388 202.9 3.1e-52 >>CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2 (338 aa) initn: 2388 init1: 2388 opt: 2388 Z-score: 1051.4 bits: 202.9 E(32554): 3.1e-52 Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338) 10 20 30 40 50 60 pF1KB9 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS 250 260 270 280 290 300 310 320 330 pF1KB9 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF :::::::::::::::::::::::::::::::::::::: CCDS22 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF 310 320 330 338 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:26:27 2016 done: Tue Nov 8 04:26:28 2016 Total Scan time: 2.650 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]