FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5429, 335 aa 1>>>pF1KE5429 335 - 335 aa - 335 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4864+/-0.000851; mu= 14.9192+/- 0.051 mean_var=64.0261+/-12.848, 0's: 0 Z-trim(106.1): 23 B-trim: 0 in 0/50 Lambda= 0.160286 statistics sampled from 8767 (8777) to 8767 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.27), width: 16 Scan time: 2.290 The best scores are: opt bits E(32554) CCDS2246.1 METAP1D gene_id:254042|Hs108|chr2 ( 335) 2289 538.0 4.1e-153 CCDS47110.1 METAP1 gene_id:23173|Hs108|chr4 ( 386) 844 203.9 1.8e-52 >>CCDS2246.1 METAP1D gene_id:254042|Hs108|chr2 (335 aa) initn: 2289 init1: 2289 opt: 2289 Z-score: 2862.4 bits: 538.0 E(32554): 4.1e-153 Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE5 MAAPSGVHLLVRRGSHRIFSSPLNHIYLHKQSSSQQRRNFFFRRQRDISHSIVLPAAVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 MAAPSGVHLLVRRGSHRIFSSPLNHIYLHKQSSSQQRRNFFFRRQRDISHSIVLPAAVSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AHPVPKHIKKPDYVTTGIVPDWGDSIEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 AHPVPKHIKKPDYVTTGIVPDWGDSIEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 TEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 VYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 NGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 NGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDA 250 260 270 280 290 300 310 320 330 pF1KE5 WTVVSLDNQRSAQFEHTVLITSRGAQILTKLPHEA ::::::::::::::::::::::::::::::::::: CCDS22 WTVVSLDNQRSAQFEHTVLITSRGAQILTKLPHEA 310 320 330 >>CCDS47110.1 METAP1 gene_id:23173|Hs108|chr4 (386 aa) initn: 811 init1: 595 opt: 844 Z-score: 1055.5 bits: 203.9 E(32554): 1.8e-52 Smith-Waterman score: 844; 47.1% identity (75.7% similar) in 276 aa overlap (63-330:98-373) 40 50 60 70 80 pF1KE5 SSQQRRNFFFRRQRDISHSIVLPAAVSSAHPVPKHIKKPDYVT--TGIVPDW----GDS- :::..:..:::. :. . : : CCDS47 TVEGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQ 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE5 IEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMTTEEIDALVHREIISHNAYPSPLGYG :.. . ..:.:.. .:.:::.:: .:. .: .:::::: :: :..: :::::.: CCDS47 IKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE5 GFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKK .:::: :::::.:.:::::: ::::.:::.:.:.:.: :::::: .:::.::.::. ..: CCDS47 NFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARK 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE5 LVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIW ::... .: .:: : . :. . .:: :.. .. :::.: . :::: . :: :.. CCDS47 LVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVP 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE5 HHANDSDLP-MEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRG :.:... . :. : .:::::.: ::. . .. :.::.:. :..::::::::.:.:. : CCDS47 HYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTG 310 320 330 340 350 360 330 pF1KE5 AQILTKLPHEA .:::. CCDS47 CEILTRRLDSARPHFMSQF 370 380 335 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:41:03 2016 done: Tue Nov 8 00:41:03 2016 Total Scan time: 2.290 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]