FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3227, 520 aa
  1>>>pF1KE3227 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7034+/-0.00109; mu= 15.4811+/- 0.065
 mean_var=60.6111+/-12.074, 0's: 0 Z-trim(102.0): 21  B-trim: 13 in 1/47
 Lambda= 0.164740
 statistics sampled from 6770 (6772) to 6770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.208), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS2243.2 DCAF17 gene_id:80067|Hs108|chr2         ( 520) 3501 841.1       0
CCDS54419.1 DCAF17 gene_id:80067|Hs108|chr2        ( 453) 2213 534.9 7.1e-152


>>CCDS2243.2 DCAF17 gene_id:80067|Hs108|chr2              (520 aa)
 initn: 3501 init1: 3501 opt: 3501  Z-score: 4493.5  bits: 841.1 E(32554):    0
Smith-Waterman score: 3501; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
              430       440       450       460       470       480

              490       500       510       520
pF1KE3 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
       ::::::::::::::::::::::::::::::::::::::::
CCDS22 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
              490       500       510       520

>>CCDS54419.1 DCAF17 gene_id:80067|Hs108|chr2             (453 aa)
 initn: 2213 init1: 2213 opt: 2213  Z-score: 2840.1  bits: 534.9 E(32554): 7.1e-152
Smith-Waterman score: 2900; 87.1% identity (87.1% similar) in 520 aa overlap (1-520:1-453)

               10        20        30        40        50        60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
       :::::::::::::::::::::::::::                                 
CCDS54 PWHYIVTPNKKKQKGVFHICALKDNSL---------------------------------
              310       320                                        

              370       380       390       400       410       420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
                                         ::::::::::::::::::::::::::
CCDS54 ----------------------------------NENVLTVTASGRVVKKSFNLLDDDPE
                                         330       340       350   

              430       440       450       460       470       480
pF1KE3 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
           360       370       380       390       400       410   

              490       500       510       520
pF1KE3 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
       ::::::::::::::::::::::::::::::::::::::::
CCDS54 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
           420       430       440       450   




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:37:10 2016 done: Sat Nov  5 23:37:11 2016
 Total Scan time:  3.070 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]