FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6670, 296 aa
  1>>>pF1KE6670 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2541+/-0.000347; mu= 16.2791+/- 0.022
 mean_var=73.1291+/-14.977, 0's: 0 Z-trim(114.1): 20  B-trim: 0 in 0/51
 Lambda= 0.149979
 statistics sampled from 23696 (23697) to 23696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.278), width:  16
 Scan time:  7.220

The best scores are:                                      opt bits E(85289)
NP_056517 (OMIM: 277410,611935) methylmalonic acid ( 296) 2010 444.0 1.6e-124


>>NP_056517 (OMIM: 277410,611935) methylmalonic aciduria  (296 aa)
 initn: 2010 init1: 2010 opt: 2010  Z-score: 2356.4  bits: 444.0 E(85289): 1.6e-124
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE6 MANVLCNRARLVSYLPGFCSLVKRVVNPKAFSTAGSSGSDESHVAAAPPDICSRTVWPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MANVLCNRARLVSYLPGFCSLVKRVVNPKAFSTAGSSGSDESHVAAAPPDICSRTVWPDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSLVHKTLPDVLAEPLSSERHEFVMAQYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSLVHKTLPDVLAEPLSSERHEFVMAQYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE6 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMKKLSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMKKLSGN
              250       260       270       280       290      




296 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:17:01 2016 done: Tue Nov  8 15:17:02 2016
 Total Scan time:  7.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]