Result of FASTA (ccds) for
pFN21AE6648
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6648, 223 aa
1>>>pF1KE6648 223 - 223 aa - 223 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2717+/-0.000683; mu= 16.0386+/- 0.041
mean_var=110.0446+/-20.882, 0's: 0 Z-trim(114.1): 61 B-trim: 17 in 1/51
Lambda= 0.122262
statistics sampled from 14608 (14672) to 14608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.451), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2 ( 223) 1631 297.4 4.8e-81
CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2 ( 223) 1621 295.6 1.6e-80
CCDS74574.1 CFC1 gene_id:55997|Hs108|chr2 ( 191) 585 112.8 1.5e-25
CCDS74573.1 CFC1 gene_id:55997|Hs108|chr2 ( 148) 565 109.2 1.5e-24
CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3 ( 172) 319 65.9 1.9e-11
CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3 ( 188) 319 65.9 2e-11
>>CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2 (223 aa)
initn: 1631 init1: 1631 opt: 1631 Z-score: 1568.5 bits: 297.4 E(32554): 4.8e-81
Smith-Waterman score: 1631; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE6 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VTGSAEGWGPEEPLPYSRAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VTGSAEGWGPEEPLPYSRAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL
130 140 150 160 170 180
190 200 210 220
pF1KE6 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
:::::::::::::::::::::::::::::::::::::::::::
CCDS21 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
190 200 210 220
>>CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2 (223 aa)
initn: 1621 init1: 1621 opt: 1621 Z-score: 1559.0 bits: 295.6 E(32554): 1.6e-80
Smith-Waterman score: 1621; 99.6% identity (99.6% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE6 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VTGSAEGWGPEEPLPYSRAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTGSAEGWGPEEPLPYSWAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL
130 140 150 160 170 180
190 200 210 220
pF1KE6 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
:::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
190 200 210 220
>>CCDS74574.1 CFC1 gene_id:55997|Hs108|chr2 (191 aa)
initn: 623 init1: 565 opt: 585 Z-score: 572.2 bits: 112.8 E(32554): 1.5e-25
Smith-Waterman score: 585; 58.2% identity (68.1% similar) in 182 aa overlap (1-177:1-176)
10 20 30 40 50 60
pF1KE6 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 VTGSAEGWGPEEPLPYSRAFGEGASARPRCCRNG----GTCVLGSFCVCPAHFTGRYCEH
:::::::::::::::::::::: ..: : . : .: . .: : : . :
CCDS74 VTGSAEGWGPEEPLPYSRAFGE-VNAAPWSTEPGPSAPATSAGASSGPCTASPSRRLTAV
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 DQRRSECGALEHGAWTLR-ACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGA
.. : .: : : ::. : : : : . : :. . . :..::
CCDS74 TRKTSWPPTLTGRAPGARPACYSC-C--PAHSCT--ASCARMRPRTLGPWSLPSSSGSGA
120 130 140 150 160 170
180 190 200 210 220
pF1KE6 PSLLLLLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
:.
CCDS74 PAEGRDLGIAFNFLCCK
180 190
>>CCDS74573.1 CFC1 gene_id:55997|Hs108|chr2 (148 aa)
initn: 565 init1: 565 opt: 565 Z-score: 554.4 bits: 109.2 E(32554): 1.5e-24
Smith-Waterman score: 876; 66.4% identity (66.4% similar) in 223 aa overlap (1-223:1-148)
10 20 30 40 50 60
pF1KE6 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VTGSAEGWGPEEPLPYSRAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR
::::::::::::::::::::::
CCDS74 VTGSAEGWGPEEPLPYSRAFGE--------------------------------------
70 80
130 140 150 160 170 180
pF1KE6 SECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL
:::::::::::::::::::::::
CCDS74 -------------------------------------DPKDFLASHAHGPSAGGAPSLLL
90 100
190 200 210 220
pF1KE6 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
:::::::::::::::::::::::::::::::::::::::::::
CCDS74 LLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
110 120 130 140
>>CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3 (172 aa)
initn: 336 init1: 316 opt: 319 Z-score: 319.1 bits: 65.9 E(32554): 1.9e-11
Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (68-184:36-165)
40 50 60 70 80
pF1KE6 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR----
: ::: : : :. : . .
CCDS54 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT
10 20 30 40 50 60
90 100 110 120 130 140
pF1KE6 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL
:: :::::.:::::.:: : :: :::: :. .::.. : .: . : ::.: : :.:.
CCDS54 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF
70 80 90 100 110 120
150 160 170 180 190 200
pF1KE6 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP
: :: . ..::.. . : .. . ...:. :
CCDS54 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY
130 140 150 160 170
210 220
pF1KE6 SVLQRERRPCGRPGLGHRL
>>CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3 (188 aa)
initn: 316 init1: 316 opt: 319 Z-score: 318.7 bits: 65.9 E(32554): 2e-11
Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (68-184:52-181)
40 50 60 70 80
pF1KE6 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR----
: ::: : : :. : . .
CCDS27 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT
30 40 50 60 70 80
90 100 110 120 130 140
pF1KE6 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL
:: :::::.:::::.:: : :: :::: :. .::.. : .: . : ::.: : :.:.
CCDS27 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KE6 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP
: :: . ..::.. . : .. . ...:. :
CCDS27 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY
150 160 170 180
210 220
pF1KE6 SVLQRERRPCGRPGLGHRL
223 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:06:17 2016 done: Tue Nov 8 15:06:18 2016
Total Scan time: 1.600 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]