FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5238, 259 aa 1>>>pF1KE5238 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4839+/-0.00108; mu= 13.4703+/- 0.064 mean_var=64.0045+/-13.734, 0's: 0 Z-trim(102.3): 30 B-trim: 0 in 0/49 Lambda= 0.160313 statistics sampled from 6863 (6868) to 6863 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.211), width: 16 Scan time: 1.860 The best scores are: opt bits E(32554) CCDS2035.1 UNC50 gene_id:25972|Hs108|chr2 ( 259) 1752 414.2 4.6e-116 CCDS82485.1 UNC50 gene_id:25972|Hs108|chr2 ( 276) 1752 414.2 4.9e-116 >>CCDS2035.1 UNC50 gene_id:25972|Hs108|chr2 (259 aa) initn: 1752 init1: 1752 opt: 1752 Z-score: 2197.1 bits: 414.2 E(32554): 4.6e-116 Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE5 MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQMDFEFAAWQMLYLFTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQMDFEFAAWQMLYLFTSP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 QRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNAFYPLLVILHFIQLFFIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 DCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNAFYPLLVILHFIQLFFIN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 HVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSL 190 200 210 220 230 240 250 pF1KE5 ALGWNFTHTLCSFYKYRVK ::::::::::::::::::: CCDS20 ALGWNFTHTLCSFYKYRVK 250 >>CCDS82485.1 UNC50 gene_id:25972|Hs108|chr2 (276 aa) initn: 1752 init1: 1752 opt: 1752 Z-score: 2196.7 bits: 414.2 E(32554): 4.9e-116 Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:18-276) 10 20 30 40 pF1KE5 MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQ ::::::::::::::::::::::::::::::::::::::::::: CCDS82 MFLQNTCKRNVFLPSRKMLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 MDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 DMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE5 FYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTV 190 200 210 220 230 240 230 240 250 pF1KE5 ILLYPFAPLILLYGLSLALGWNFTHTLCSFYKYRVK :::::::::::::::::::::::::::::::::::: CCDS82 ILLYPFAPLILLYGLSLALGWNFTHTLCSFYKYRVK 250 260 270 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:47:29 2016 done: Mon Nov 7 22:47:29 2016 Total Scan time: 1.860 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]