Result of FASTA (omim) for
pFN21AE6573
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6573, 201 aa
1>>>pF1KE6573 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9136+/-0.000267; mu= 8.1914+/- 0.017
mean_var=108.8633+/-21.784, 0's: 0 Z-trim(122.4): 23 B-trim: 557 in 2/56
Lambda= 0.122923
statistics sampled from 40406 (40429) to 40406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.474), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
NP_075063 (OMIM: 609139,610250,614751) receptor ex ( 201) 1335 246.0 3e-65
XP_005264559 (OMIM: 609139,610250,614751) PREDICTE ( 284) 1317 242.9 3.7e-64
XP_016860216 (OMIM: 609139,610250,614751) PREDICTE ( 208) 1266 233.8 1.5e-61
NP_001158202 (OMIM: 609139,610250,614751) receptor ( 208) 1266 233.8 1.5e-61
XP_011531346 (OMIM: 609139,610250,614751) PREDICTE ( 278) 1250 231.0 1.4e-60
XP_016860215 (OMIM: 609139,610250,614751) PREDICTE ( 220) 1248 230.6 1.4e-60
XP_011531347 (OMIM: 609139,610250,614751) PREDICTE ( 276) 1248 230.6 1.8e-60
XP_016860214 (OMIM: 609139,610250,614751) PREDICTE ( 279) 1248 230.6 1.8e-60
NP_001158203 (OMIM: 609139,610250,614751) receptor ( 174) 1112 206.4 2.2e-53
XP_005264561 (OMIM: 609139,610250,614751) PREDICTE ( 246) 1068 198.7 6.5e-51
NP_001258732 (OMIM: 609347,615625) receptor expres ( 254) 895 168.0 1.1e-41
NP_057690 (OMIM: 609347,615625) receptor expressio ( 252) 866 162.9 4e-40
NP_001001330 (OMIM: 609348) receptor expression-en ( 255) 852 160.4 2.3e-39
NP_001303893 (OMIM: 609349) receptor expression-en ( 251) 828 156.1 4.3e-38
NP_079508 (OMIM: 609349) receptor expression-enhan ( 257) 828 156.1 4.4e-38
NP_001303894 (OMIM: 609349) receptor expression-en ( 173) 738 140.1 2e-33
XP_016871385 (OMIM: 609348) PREDICTED: receptor ex ( 152) 713 135.6 3.8e-32
XP_011537803 (OMIM: 609348) PREDICTED: receptor ex ( 152) 713 135.6 3.8e-32
NP_001158204 (OMIM: 609139,610250,614751) receptor ( 143) 415 82.8 3e-16
XP_016865333 (OMIM: 125265) PREDICTED: receptor ex ( 257) 334 68.5 1e-11
NP_005660 (OMIM: 125265) receptor expression-enhan ( 189) 329 67.6 1.5e-11
NP_001316485 (OMIM: 609346) receptor expression-en ( 211) 284 59.6 4e-09
NP_612402 (OMIM: 609346) receptor expression-enhan ( 184) 279 58.7 6.7e-09
>>NP_075063 (OMIM: 609139,610250,614751) receptor expres (201 aa)
initn: 1335 init1: 1335 opt: 1335 Z-score: 1292.3 bits: 246.0 E(85289): 3e-65
Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
130 140 150 160 170 180
190 200
pF1KE6 KHGQPKMSRSASESASSSGTA
:::::::::::::::::::::
NP_075 KHGQPKMSRSASESASSSGTA
190 200
>>XP_005264559 (OMIM: 609139,610250,614751) PREDICTED: r (284 aa)
initn: 1336 init1: 1317 opt: 1317 Z-score: 1272.8 bits: 242.9 E(85289): 3.7e-64
Smith-Waterman score: 1317; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
130 140 150 160 170 180
190 200
pF1KE6 KHGQPKMSRSASESASSSGTA
::::::::::::::::::
XP_005 KHGQPKMSRSASESASSSVCTCCSTCRTWKVVEGDVNEGGMKAWEPHQVQNPLAFSDDEE
190 200 210 220 230 240
>>XP_016860216 (OMIM: 609139,610250,614751) PREDICTED: r (208 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1226.0 bits: 233.8 E(85289): 1.5e-61
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 190 aa overlap (12-201:19-208)
10 20 30 40 50
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
::::::::::::::::::::::::::::::::::::::::::
XP_016 MVAMTPPRPCRRAQSHLGLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
130 140 150 160 170 180
180 190 200
pF1KE6 GSGRASGKHGQPKMSRSASESASSSGTA
::::::::::::::::::::::::::::
XP_016 GSGRASGKHGQPKMSRSASESASSSGTA
190 200
>>NP_001158202 (OMIM: 609139,610250,614751) receptor exp (208 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1226.0 bits: 233.8 E(85289): 1.5e-61
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 190 aa overlap (12-201:19-208)
10 20 30 40 50
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
::::::::::::::::::::::::::::::::::::::::::
NP_001 MQKVLSNGQTEEVRSGSRLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
130 140 150 160 170 180
180 190 200
pF1KE6 GSGRASGKHGQPKMSRSASESASSSGTA
::::::::::::::::::::::::::::
NP_001 GSGRASGKHGQPKMSRSASESASSSGTA
190 200
>>XP_011531346 (OMIM: 609139,610250,614751) PREDICTED: r (278 aa)
initn: 1269 init1: 1250 opt: 1250 Z-score: 1208.7 bits: 231.0 E(85289): 1.4e-60
Smith-Waterman score: 1250; 98.9% identity (99.5% similar) in 190 aa overlap (9-198:3-192)
10 20 30 40 50 60
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
:. :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCLLGLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
120 130 140 150 160 170
190 200
pF1KE6 KHGQPKMSRSASESASSSGTA
::::::::::::::::::
XP_011 KHGQPKMSRSASESASSSVCTCCSTCRTWKVVEGDVNEGGMKAWEPHQVQNPLAFSDDEE
180 190 200 210 220 230
>>XP_016860215 (OMIM: 609139,610250,614751) PREDICTED: r (220 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 1208.3 bits: 230.6 E(85289): 1.4e-60
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 187 aa overlap (12-198:19-205)
10 20 30 40 50
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
::::::::::::::::::::::::::::::::::::::::::
XP_016 MVAMTPPRPCRRAQSHLGLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
130 140 150 160 170 180
180 190 200
pF1KE6 GSGRASGKHGQPKMSRSASESASSSGTA
:::::::::::::::::::::::::
XP_016 GSGRASGKHGQPKMSRSASESASSSVCTCCSTCRTWKGTA
190 200 210 220
>>XP_011531347 (OMIM: 609139,610250,614751) PREDICTED: r (276 aa)
initn: 1267 init1: 1248 opt: 1248 Z-score: 1206.8 bits: 230.6 E(85289): 1.8e-60
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 187 aa overlap (12-198:4-190)
10 20 30 40 50 60
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRRLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
120 130 140 150 160 170
190 200
pF1KE6 KHGQPKMSRSASESASSSGTA
::::::::::::::::::
XP_011 KHGQPKMSRSASESASSSVCTCCSTCRTWKVVEGDVNEGGMKAWEPHQVQNPLAFSDDEE
180 190 200 210 220 230
>>XP_016860214 (OMIM: 609139,610250,614751) PREDICTED: r (279 aa)
initn: 1267 init1: 1248 opt: 1248 Z-score: 1206.8 bits: 230.6 E(85289): 1.8e-60
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 187 aa overlap (12-198:19-205)
10 20 30 40 50
pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
::::::::::::::::::::::::::::::::::::::::::
XP_016 MVAMTPPRPCRRAQSHLGLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP
130 140 150 160 170 180
180 190 200
pF1KE6 GSGRASGKHGQPKMSRSASESASSSGTA
:::::::::::::::::::::::::
XP_016 GSGRASGKHGQPKMSRSASESASSSVVEGDVNEGGMKAWEPHQVQNPLAFSDDEEEDLLD
190 200 210 220 230 240
>>NP_001158203 (OMIM: 609139,610250,614751) receptor exp (174 aa)
initn: 1112 init1: 1112 opt: 1112 Z-score: 1079.6 bits: 206.4 E(85289): 2.2e-53
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 166 aa overlap (36-201:9-174)
10 20 30 40 50 60
pF1KE6 ISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFY
::::::::::::::::::::::::::::::
NP_001 MDHLQAGGVKWMMYWIIFALFTTAETFTDIFLCWFPFY
10 20 30
70 80 90 100 110 120
pF1KE6 YELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 LNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQP
100 110 120 130 140 150
190 200
pF1KE6 KMSRSASESASSSGTA
::::::::::::::::
NP_001 KMSRSASESASSSGTA
160 170
>>XP_005264561 (OMIM: 609139,610250,614751) PREDICTED: r (246 aa)
initn: 1087 init1: 1068 opt: 1068 Z-score: 1035.1 bits: 198.7 E(85289): 6.5e-51
Smith-Waterman score: 1068; 100.0% identity (100.0% similar) in 160 aa overlap (39-198:1-160)
10 20 30 40 50 60
pF1KE6 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL
::::::::::::::::::::::::::::::
XP_005 MMYWIIFALFTTAETFTDIFLCWFPFYYEL
10 20 30
70 80 90 100 110 120
pF1KE6 KIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 AATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQPKMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQPKMS
100 110 120 130 140 150
190 200
pF1KE6 RSASESASSSGTA
::::::::::
XP_005 RSASESASSSVCTCCSTCRTWKVVEGDVNEGGMKAWEPHQVQNPLAFSDDEEEDLLDFMY
160 170 180 190 200 210
201 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:31:19 2016 done: Tue Nov 8 14:31:20 2016
Total Scan time: 5.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]