FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6573, 201 aa 1>>>pF1KE6573 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0599+/-0.000644; mu= 7.6031+/- 0.039 mean_var=111.8199+/-22.414, 0's: 0 Z-trim(114.9): 12 B-trim: 113 in 1/50 Lambda= 0.121287 statistics sampled from 15493 (15505) to 15493 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.476), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS1989.1 REEP1 gene_id:65055|Hs108|chr2 ( 201) 1335 242.9 9.8e-65 CCDS54374.1 REEP1 gene_id:65055|Hs108|chr2 ( 208) 1266 230.9 4.4e-61 CCDS54372.1 REEP1 gene_id:65055|Hs108|chr2 ( 174) 1112 203.9 4.8e-53 CCDS64259.1 REEP2 gene_id:51308|Hs108|chr5 ( 254) 895 166.0 1.8e-41 CCDS4205.1 REEP2 gene_id:51308|Hs108|chr5 ( 252) 866 160.9 6e-40 CCDS44411.1 REEP3 gene_id:221035|Hs108|chr10 ( 255) 852 158.5 3.3e-39 CCDS83258.1 REEP4 gene_id:80346|Hs108|chr8 ( 251) 828 154.3 6e-38 CCDS6024.1 REEP4 gene_id:80346|Hs108|chr8 ( 257) 828 154.3 6.2e-38 CCDS83257.1 REEP4 gene_id:80346|Hs108|chr8 ( 173) 738 138.4 2.4e-33 CCDS54373.1 REEP1 gene_id:65055|Hs108|chr2 ( 143) 415 81.9 2.1e-16 CCDS4109.2 REEP5 gene_id:7905|Hs108|chr5 ( 189) 329 66.9 9.1e-12 >>CCDS1989.1 REEP1 gene_id:65055|Hs108|chr2 (201 aa) initn: 1335 init1: 1335 opt: 1335 Z-score: 1275.7 bits: 242.9 E(32554): 9.8e-65 Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG 130 140 150 160 170 180 190 200 pF1KE6 KHGQPKMSRSASESASSSGTA ::::::::::::::::::::: CCDS19 KHGQPKMSRSASESASSSGTA 190 200 >>CCDS54374.1 REEP1 gene_id:65055|Hs108|chr2 (208 aa) initn: 1266 init1: 1266 opt: 1266 Z-score: 1210.2 bits: 230.9 E(32554): 4.4e-61 Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 190 aa overlap (12-201:19-208) 10 20 30 40 50 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET :::::::::::::::::::::::::::::::::::::::::: CCDS54 MQKVLSNGQTEEVRSGSRLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAET 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP 130 140 150 160 170 180 180 190 200 pF1KE6 GSGRASGKHGQPKMSRSASESASSSGTA :::::::::::::::::::::::::::: CCDS54 GSGRASGKHGQPKMSRSASESASSSGTA 190 200 >>CCDS54372.1 REEP1 gene_id:65055|Hs108|chr2 (174 aa) initn: 1112 init1: 1112 opt: 1112 Z-score: 1065.7 bits: 203.9 E(32554): 4.8e-53 Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 166 aa overlap (36-201:9-174) 10 20 30 40 50 60 pF1KE6 ISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFY :::::::::::::::::::::::::::::: CCDS54 MDHLQAGGVKWMMYWIIFALFTTAETFTDIFLCWFPFY 10 20 30 70 80 90 100 110 120 pF1KE6 YELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 YELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRG 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 LNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQP 100 110 120 130 140 150 190 200 pF1KE6 KMSRSASESASSSGTA :::::::::::::::: CCDS54 KMSRSASESASSSGTA 160 170 >>CCDS64259.1 REEP2 gene_id:51308|Hs108|chr5 (254 aa) initn: 910 init1: 875 opt: 895 Z-score: 858.0 bits: 166.0 E(32554): 1.8e-41 Smith-Waterman score: 895; 68.4% identity (83.7% similar) in 209 aa overlap (1-201:1-209) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::::::::::::::::::: ::::::.:..:::::::::::.::.::::::.::: : CCDS64 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::.::::::: :::::::::::.:::::::::::.::::::. ..::.:.::..... CCDS64 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGA-PA--PSGP--PPPGS ::::::.::.::: ::.::::.:::.:::::::::: :: . : : :.: : ::: CCDS64 VGKRGLNLAANAAVTAAAKGQGVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGS 130 140 150 160 170 180 180 190 200 pF1KE6 --GRASGKHGQPKMS-RSASESASSSGTA .: .: ::... :.: : CCDS64 LLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLK 190 200 210 220 230 240 >>CCDS4205.1 REEP2 gene_id:51308|Hs108|chr5 (252 aa) initn: 864 init1: 763 opt: 866 Z-score: 830.6 bits: 160.9 E(32554): 6e-40 Smith-Waterman score: 866; 67.5% identity (82.8% similar) in 209 aa overlap (1-201:1-207) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::::::::::::::::::: ::::::.:..:::::::::::.::.::::::.::: : CCDS42 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::.::::::: :::::::::::.:::::::::::.::::::. ..::.:.::..... CCDS42 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGA-PA--PSGP--PPPGS ::::::.::.::: ::.:: .:::.:::::::::: :: . : : :.: : ::: CCDS42 VGKRGLNLAANAAVTAAAKG--VLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGS 130 140 150 160 170 180 190 200 pF1KE6 --GRASGKHGQPKMS-RSASESASSSGTA .: .: ::... :.: : CCDS42 LLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLK 180 190 200 210 220 230 >>CCDS44411.1 REEP3 gene_id:221035|Hs108|chr10 (255 aa) initn: 833 init1: 833 opt: 852 Z-score: 817.3 bits: 158.5 E(32554): 3.3e-39 Smith-Waterman score: 852; 66.5% identity (85.3% similar) in 191 aa overlap (1-191:1-188) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::.::: :::.:: ::::::::::::.:..::::.::::::.:::.:. :: .: . CCDS44 MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::.::::::::: :::::::::.::.::::.:: :::::.:::: .::::.:.:...:. CCDS44 WFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG ::..:::.:::::: :: :.:::..::::::::.:::::.:: : : : . CCDS44 FGRQGLNLAATAAVTAAVKSQGAITERLRSFSMHDLTTIQGD---EPVGQRPYQPLPEAK 130 140 150 160 170 190 200 pF1KE6 KHGQPKMSRSASESASSSGTA :...: :.:: CCDS44 KKSKPAPSESAGYGIPLKDGDEKTDEEAEGPYSDNEMLTHKGLRRSQSMKSVKTTKGRKE 180 190 200 210 220 230 >>CCDS83258.1 REEP4 gene_id:80346|Hs108|chr8 (251 aa) initn: 822 init1: 822 opt: 828 Z-score: 794.7 bits: 154.3 E(32554): 6e-38 Smith-Waterman score: 828; 70.9% identity (87.8% similar) in 172 aa overlap (1-172:1-170) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::.: :::::.:: : ::: ::::::.:.:.:::.::::::.:::: .:: ::::. CCDS83 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::::.:.::: :::::::::.::::::::::.:: .::::: .::::.:::.... CCDS83 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG :::::::.::.:::.::.:.::::. :::::::::: .: . ::::. : CCDS83 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSI--SDAPAPAYHDPLYLEDQVS 130 140 150 160 170 190 200 pF1KE6 KHGQPKMSRSASESASSSGTA CCDS83 HRRPPIGHLALPEGSDEEKDCALRRGQLGSAASAPFLPRALQGSRAIWRDLGLHIWPACT 180 190 200 210 220 230 >>CCDS6024.1 REEP4 gene_id:80346|Hs108|chr8 (257 aa) initn: 841 init1: 822 opt: 828 Z-score: 794.6 bits: 154.3 E(32554): 6.2e-38 Smith-Waterman score: 828; 70.9% identity (87.8% similar) in 172 aa overlap (1-172:1-170) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::.: :::::.:: : ::: ::::::.:.:.:::.::::::.:::: .:: ::::. CCDS60 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::::.:.::: :::::::::.::::::::::.:: .::::: .::::.:::.... CCDS60 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG :::::::.::.:::.::.:.::::. :::::::::: .: . ::::. : CCDS60 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSI--SDAPAPAYHDPLYLEDQVS 130 140 150 160 170 190 200 pF1KE6 KHGQPKMSRSASESASSSGTA CCDS60 HRRPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGT 180 190 200 210 220 230 >>CCDS83257.1 REEP4 gene_id:80346|Hs108|chr8 (173 aa) initn: 756 init1: 730 opt: 738 Z-score: 712.1 bits: 138.4 E(32554): 2.4e-33 Smith-Waterman score: 738; 64.7% identity (82.4% similar) in 170 aa overlap (1-170:1-169) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC ::::.: :::::.:: : ::: ::::::.:.:.:::.::::::.:::: .:: ::::. CCDS83 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH :::::::.:.::: :::::::::.::::::::::.:: .::::: .::::.:::.... CCDS83 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG :::::::.::.:::.::.:: : . : . :. .: . . : :: CCDS83 FGKRGLNIAASAAVQAATKGTGPGACRTATPRMSVGQILRQSPGRQP-GPERSP 130 140 150 160 170 190 200 pF1KE6 KHGQPKMSRSASESASSSGTA >>CCDS54373.1 REEP1 gene_id:65055|Hs108|chr2 (143 aa) initn: 480 init1: 415 opt: 415 Z-score: 407.9 bits: 81.9 E(32554): 2.1e-16 Smith-Waterman score: 415; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61) 10 20 30 40 50 60 pF1KE6 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH : CCDS54 WDRVPYRRDCGASACRTSPPSGETAPLLPRAPHHRGLGGPAANTASLRCPGVLLRALAAQ 70 80 90 100 110 120 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:31:18 2016 done: Tue Nov 8 14:31:19 2016 Total Scan time: 1.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]