FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4363, 381 aa 1>>>pF1KE4363 381 - 381 aa - 381 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9628+/-0.000312; mu= 15.6184+/- 0.019 mean_var=113.1730+/-23.204, 0's: 0 Z-trim(119.7): 11 B-trim: 541 in 1/54 Lambda= 0.120560 statistics sampled from 34061 (34072) to 34061 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.399), width: 16 Scan time: 8.470 The best scores are: opt bits E(85289) XP_016860191 (OMIM: 178640,265120) PREDICTED: pulm ( 393) 2721 483.7 3.1e-136 XP_005264544 (OMIM: 178640,265120) PREDICTED: pulm ( 393) 2721 483.7 3.1e-136 NP_000533 (OMIM: 178640,265120) pulmonary surfacta ( 393) 2721 483.7 3.1e-136 NP_942140 (OMIM: 178640,265120) pulmonary surfacta ( 393) 2721 483.7 3.1e-136 XP_016860192 (OMIM: 178640,265120) PREDICTED: pulm ( 377) 2675 475.7 7.8e-134 XP_005264545 (OMIM: 178640,265120) PREDICTED: pulm ( 377) 2675 475.7 7.8e-134 XP_005264547 (OMIM: 178640,265120) PREDICTED: pulm ( 339) 2375 423.5 3.7e-118 >>XP_016860191 (OMIM: 178640,265120) PREDICTED: pulmonar (393 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 2566.7 bits: 483.7 E(85289): 3.1e-136 Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393) 10 20 30 40 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT 310 320 330 340 350 360 350 360 370 380 pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::::::::::::::: XP_016 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL 370 380 390 >>XP_005264544 (OMIM: 178640,265120) PREDICTED: pulmonar (393 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 2566.7 bits: 483.7 E(85289): 3.1e-136 Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393) 10 20 30 40 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT 310 320 330 340 350 360 350 360 370 380 pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::::::::::::::: XP_005 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL 370 380 390 >>NP_000533 (OMIM: 178640,265120) pulmonary surfactant-a (393 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 2566.7 bits: 483.7 E(85289): 3.1e-136 Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393) 10 20 30 40 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ :::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT 310 320 330 340 350 360 350 360 370 380 pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::::::::::::::: NP_000 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL 370 380 390 >>NP_942140 (OMIM: 178640,265120) pulmonary surfactant-a (393 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 2566.7 bits: 483.7 E(85289): 3.1e-136 Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393) 10 20 30 40 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ :::::::::::::::::::::::::::::::::::::::::::::::: NP_942 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT 310 320 330 340 350 360 350 360 370 380 pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::::::::::::::: NP_942 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL 370 380 390 >>XP_016860192 (OMIM: 178640,265120) PREDICTED: pulmonar (377 aa) initn: 2033 init1: 2033 opt: 2675 Z-score: 2523.7 bits: 475.7 E(85289): 7.8e-134 Smith-Waterman score: 2675; 99.0% identity (99.0% similar) in 381 aa overlap (1-381:1-377) 10 20 30 40 50 60 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECH :::::::::::::::::::::::::::::::::::::::::::::: :::::::::: XP_016 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPR----EWLPRDSECH 250 260 270 280 290 310 320 330 340 350 360 pF1KE4 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC 300 310 320 330 340 350 370 380 pF1KE4 QALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::: XP_016 QALGVCGTMSSPLQCIHSPDL 360 370 >>XP_005264545 (OMIM: 178640,265120) PREDICTED: pulmonar (377 aa) initn: 2033 init1: 2033 opt: 2675 Z-score: 2523.7 bits: 475.7 E(85289): 7.8e-134 Smith-Waterman score: 2675; 99.0% identity (99.0% similar) in 381 aa overlap (1-381:1-377) 10 20 30 40 50 60 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECH :::::::::::::::::::::::::::::::::::::::::::::: :::::::::: XP_005 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPR----EWLPRDSECH 250 260 270 280 290 310 320 330 340 350 360 pF1KE4 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC 300 310 320 330 340 350 370 380 pF1KE4 QALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::: XP_005 QALGVCGTMSSPLQCIHSPDL 360 370 >>XP_005264547 (OMIM: 178640,265120) PREDICTED: pulmonar (339 aa) initn: 2375 init1: 2375 opt: 2375 Z-score: 2242.3 bits: 423.5 E(85289): 3.7e-118 Smith-Waterman score: 2375; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334) 10 20 30 40 50 60 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC :::::::::::::::::::::::::::::::::: XP_005 LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKLAPVC 310 320 330 370 380 pF1KE4 QALGVCGTMSSPLQCIHSPDL 381 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:03:23 2016 done: Sun Nov 6 02:03:24 2016 Total Scan time: 8.470 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]