FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4363, 381 aa 1>>>pF1KE4363 381 - 381 aa - 381 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2616+/-0.000764; mu= 13.9753+/- 0.046 mean_var=110.4243+/-22.513, 0's: 0 Z-trim(112.9): 6 B-trim: 271 in 1/49 Lambda= 0.122051 statistics sampled from 13556 (13561) to 13556 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.417), width: 16 Scan time: 2.890 The best scores are: opt bits E(32554) CCDS1983.2 SFTPB gene_id:6439|Hs108|chr2 ( 393) 2721 489.4 2.4e-138 >>CCDS1983.2 SFTPB gene_id:6439|Hs108|chr2 (393 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 2597.3 bits: 489.4 E(32554): 2.4e-138 Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393) 10 20 30 40 pF1KE4 MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ :::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT 310 320 330 340 350 360 350 360 370 380 pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ::::::::::::::::::::::::::::::::: CCDS19 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL 370 380 390 381 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:03:22 2016 done: Sun Nov 6 02:03:22 2016 Total Scan time: 2.890 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]