FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3970, 153 aa
  1>>>pF1KE3970 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3932+/-0.000579; mu= 12.1912+/- 0.035
 mean_var=100.5574+/-21.159, 0's: 0 Z-trim(115.1): 116  B-trim: 0 in 0/51
 Lambda= 0.127899
 statistics sampled from 15546 (15692) to 15546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.482), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS1981.1 RNF181 gene_id:51255|Hs108|chr2         ( 153) 1085 209.3 7.3e-55


>>CCDS1981.1 RNF181 gene_id:51255|Hs108|chr2              (153 aa)
 initn: 1085 init1: 1085 opt: 1085  Z-score: 1098.5  bits: 209.3 E(32554): 7.3e-55
Smith-Waterman score: 1085; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE3 MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 NLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYEL
               70        80        90       100       110       120

              130       140       150   
pF1KE3 PTDDDTYEEHRRDKARKQQQQHRLENLHGAMYT
       :::::::::::::::::::::::::::::::::
CCDS19 PTDDDTYEEHRRDKARKQQQQHRLENLHGAMYT
              130       140       150   




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:27:50 2016 done: Sun Nov  6 08:27:50 2016
 Total Scan time:  1.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]