FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6394, 343 aa 1>>>pF1KE6394 343 - 343 aa - 343 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6347+/-0.000327; mu= 16.3493+/- 0.020 mean_var=94.5549+/-18.893, 0's: 0 Z-trim(117.1): 3 B-trim: 33 in 1/54 Lambda= 0.131896 statistics sampled from 28746 (28747) to 28746 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.337), width: 16 Scan time: 5.300 The best scores are: opt bits E(85289) NP_690005 (OMIM: 611765) retroviral-like aspartic ( 343) 2267 441.3 1.5e-123 >>NP_690005 (OMIM: 611765) retroviral-like aspartic prot (343 aa) initn: 2267 init1: 2267 opt: 2267 Z-score: 2339.2 bits: 441.3 E(85289): 1.5e-123 Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KE6 MGSPGASLGIKKALQSEQATALPASAPAVSQPTAPAPSCLPKAGQVIPTLLREAPFSSVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 MGSPGASLGIKKALQSEQATALPASAPAVSQPTAPAPSCLPKAGQVIPTLLREAPFSSVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 APTLLCGFLFLAWVAAEVPEESSRMAGSGARSEEGRRQHAFVPEPFDGANVVPNLWLHSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 APTLLCGFLFLAWVAAEVPEESSRMAGSGARSEEGRRQHAFVPEPFDGANVVPNLWLHSF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EVINDLNHWDHITKLRFLKESLRGEALGVYNRLSPQDQGDYGTVKEALLKAFGVPGAAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 EVINDLNHWDHITKLRFLKESLRGEALGVYNRLSPQDQGDYGTVKEALLKAFGVPGAAPS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 HLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 NVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEH 250 260 270 280 290 300 310 320 330 340 pF1KE6 RTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH ::::::::::::::::::::::::::::::::::::::::::: NP_690 RTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH 310 320 330 340 343 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:53:06 2016 done: Tue Nov 8 12:53:07 2016 Total Scan time: 5.300 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]