FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1217, 199 aa
  1>>>pF1KE1217 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4387+/-0.000639; mu= 13.0111+/- 0.039
 mean_var=63.0450+/-12.311, 0's: 0 Z-trim(111.0): 9  B-trim: 0 in 0/49
 Lambda= 0.161528
 statistics sampled from 12032 (12035) to 12032 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.37), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS1891.2 GKN1 gene_id:56287|Hs108|chr2           ( 199) 1362 325.2 1.6e-89
CCDS33215.1 GKN2 gene_id:200504|Hs108|chr2         ( 184)  277 72.3   2e-13


>>CCDS1891.2 GKN1 gene_id:56287|Hs108|chr2                (199 aa)
 initn: 1362 init1: 1362 opt: 1362  Z-score: 1720.5  bits: 325.2 E(32554): 1.6e-89
Smith-Waterman score: 1362; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY
              130       140       150       160       170       180

              190         
pF1KE1 TTSVLWIVDISFCGDTVEN
       :::::::::::::::::::
CCDS18 TTSVLWIVDISFCGDTVEN
              190         

>>CCDS33215.1 GKN2 gene_id:200504|Hs108|chr2              (184 aa)
 initn: 184 init1: 184 opt: 277  Z-score: 354.5  bits: 72.3 E(32554): 2e-13
Smith-Waterman score: 277; 27.6% identity (64.9% similar) in 185 aa overlap (15-195:1-181)

               10        20        30        40        50        60
pF1KE1 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
                     ::. ..:  .: .:   . .   .:. . .::.:. :..:...::.
CCDS33               MKILVAFLVVLTIFGIQSHGYEVFNIISPSNNGGNVQETVTIDNEK
                             10        20        30        40      

               70        80        90       100       110       120
pF1KE1 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
       :.: .. . :  : ..:.:: .:. :.:......:.. ::... .: ...:.  . ::. 
CCDS33 NTAIINIHAGSCSSTTIFDYKHGYIASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQA
         50        60        70        80        90       100      

              130         140         150       160       170      
pF1KE1 QGKGPGGPPPKGLMYSVNP--NKVDDLSKF--GKNIANMCRGIPTYMAEEMQEASLFFYS
         .  ..   :    . ::  . . :.. :  :. : ..:. :: : .: . : .    .
CCDS33 LDNMFSS---KYTWVKYNPLESLIKDVDWFLLGSPIEKLCKHIPLYKGE-VVENTHNVGA
        110          120       130       140       150        160  

        180       190         
pF1KE1 GTCYTTSVLWIVDISFCGDTVEN
       : :  ...: :. ::.:.:    
CCDS33 GGCAKAGLLGILGISICADIHV 
            170       180     




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:26:25 2016 done: Sun Nov  6 18:26:25 2016
 Total Scan time:  1.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]