FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1676, 190 aa 1>>>pF1KE1676 190 - 190 aa - 190 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3614+/-0.000328; mu= 12.8347+/- 0.020 mean_var=67.3616+/-12.951, 0's: 0 Z-trim(115.9): 19 B-trim: 52 in 1/56 Lambda= 0.156267 statistics sampled from 26583 (26600) to 26583 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.312), width: 16 Scan time: 5.910 The best scores are: opt bits E(85289) NP_689729 (OMIM: 607238) COMM domain-containing pr ( 190) 1232 286.2 2.2e-77 XP_011530860 (OMIM: 607238) PREDICTED: COMM domain ( 160) 1013 236.8 1.4e-62 XP_011530861 (OMIM: 607238) PREDICTED: COMM domain ( 131) 832 195.9 2.3e-50 NP_001308711 (OMIM: 607238) COMM domain-containing ( 124) 799 188.4 3.8e-48 NP_001308710 (OMIM: 607238) COMM domain-containing ( 124) 799 188.4 3.8e-48 XP_016858901 (OMIM: 607238) PREDICTED: COMM domain ( 124) 799 188.4 3.8e-48 >>NP_689729 (OMIM: 607238) COMM domain-containing protei (190 aa) initn: 1232 init1: 1232 opt: 1232 Z-score: 1510.3 bits: 286.2 E(85289): 2.2e-77 Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE1 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE 130 140 150 160 170 180 190 pF1KE1 SISTLISQPN :::::::::: NP_689 SISTLISQPN 190 >>XP_011530860 (OMIM: 607238) PREDICTED: COMM domain-con (160 aa) initn: 1013 init1: 1013 opt: 1013 Z-score: 1244.5 bits: 236.8 E(85289): 1.4e-62 Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE1 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE :::::::::::::::::::::::::::::::::: XP_011 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQPAVSKK 130 140 150 160 190 pF1KE1 SISTLISQPN >>XP_011530861 (OMIM: 607238) PREDICTED: COMM domain-con (131 aa) initn: 832 init1: 832 opt: 832 Z-score: 1025.3 bits: 195.9 E(85289): 2.3e-50 Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 130 aa overlap (61-190:2-131) 40 50 60 70 80 90 pF1KE1 TEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQ :::::::::::::::::::::::::::::: XP_011 MSIASADMDFNQLEAFLTAQTKKQGGITSDQ 10 20 30 100 110 120 130 140 150 pF1KE1 AAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELG 40 50 60 70 80 90 160 170 180 190 pF1KE1 KYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLISQPN :::::::::::::::::::::::::::::::::::::::: XP_011 KYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLISQPN 100 110 120 130 >>NP_001308711 (OMIM: 607238) COMM domain-containing pro (124 aa) initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48 Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124) 40 50 60 70 80 90 pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK :::::::::::::::::::::::::::::: NP_001 MDFNQLEAFLTAQTKKQGGITSDQAAVISK 10 20 30 100 110 120 130 140 150 pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES 40 50 60 70 80 90 160 170 180 190 pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN :::::::::::::::::::::::::::::::::: NP_001 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN 100 110 120 >>NP_001308710 (OMIM: 607238) COMM domain-containing pro (124 aa) initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48 Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124) 40 50 60 70 80 90 pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK :::::::::::::::::::::::::::::: NP_001 MDFNQLEAFLTAQTKKQGGITSDQAAVISK 10 20 30 100 110 120 130 140 150 pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES 40 50 60 70 80 90 160 170 180 190 pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN :::::::::::::::::::::::::::::::::: NP_001 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN 100 110 120 >>XP_016858901 (OMIM: 607238) PREDICTED: COMM domain-con (124 aa) initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48 Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124) 40 50 60 70 80 90 pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK :::::::::::::::::::::::::::::: XP_016 MDFNQLEAFLTAQTKKQGGITSDQAAVISK 10 20 30 100 110 120 130 140 150 pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES 40 50 60 70 80 90 160 170 180 190 pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN :::::::::::::::::::::::::::::::::: XP_016 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN 100 110 120 190 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:27:35 2016 done: Sun Nov 6 18:27:36 2016 Total Scan time: 5.910 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]