FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1676, 190 aa
  1>>>pF1KE1676 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0778+/-0.000715; mu= 14.3656+/- 0.043
 mean_var=61.0067+/-11.685, 0's: 0 Z-trim(108.5): 18  B-trim: 0 in 0/54
 Lambda= 0.164205
 statistics sampled from 10274 (10282) to 10274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.316), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS1869.1 COMMD1 gene_id:150684|Hs108|chr2        ( 190) 1232 299.8 6.7e-82


>>CCDS1869.1 COMMD1 gene_id:150684|Hs108|chr2             (190 aa)
 initn: 1232 init1: 1232 opt: 1232  Z-score: 1583.8  bits: 299.8 E(32554): 6.7e-82
Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE1 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
              130       140       150       160       170       180

              190
pF1KE1 SISTLISQPN
       ::::::::::
CCDS18 SISTLISQPN
              190




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:27:35 2016 done: Sun Nov  6 18:27:35 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]