FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5021, 430 aa 1>>>pF1KE5021 430 - 430 aa - 430 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7820+/-0.000723; mu= 21.3868+/- 0.044 mean_var=76.0210+/-15.355, 0's: 0 Z-trim(110.8): 31 B-trim: 401 in 1/50 Lambda= 0.147098 statistics sampled from 11891 (11920) to 11891 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.366), width: 16 Scan time: 3.210 The best scores are: opt bits E(32554) CCDS1835.1 KCNK12 gene_id:56660|Hs108|chr2 ( 430) 2893 623.0 1.7e-178 CCDS9889.1 KCNK13 gene_id:56659|Hs108|chr14 ( 408) 1732 376.6 2.4e-104 >>CCDS1835.1 KCNK12 gene_id:56660|Hs108|chr2 (430 aa) initn: 2893 init1: 2893 opt: 2893 Z-score: 3318.1 bits: 623.0 E(32554): 1.7e-178 Smith-Waterman score: 2893; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430) 10 20 30 40 50 60 pF1KE5 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN 370 380 390 400 410 420 430 pF1KE5 NRLAETSASR :::::::::: CCDS18 NRLAETSASR 430 >>CCDS9889.1 KCNK13 gene_id:56659|Hs108|chr14 (408 aa) initn: 1794 init1: 1392 opt: 1732 Z-score: 1986.8 bits: 376.6 E(32554): 2.4e-104 Smith-Waterman score: 1732; 65.5% identity (84.5% similar) in 400 aa overlap (31-430:12-408) 10 20 30 40 50 60 pF1KE5 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL :::::..::.:::::: :::..::.::::: CCDS98 MAGRGFSWGPGHLNEDNARFLLLAALIVLYLLGGAAVFSAL 10 20 30 40 70 80 90 100 110 120 pF1KE5 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF : : .:. :: : ::: .:.... :::.:::::: : ::.:.: .:::::: ::: CCDS98 ELAHERQAKQRWEERLANFSRGHNLSRDELRGFLRHYEEATRAGIRVDNVRPRWDFTGAF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR ::::::::::::::::::::::: ::: ::: ::..:::::::::::.:...:.::..:. CCDS98 YFVGTVVSTIGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITIIAYIMKSCH 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE5 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG .::::: : :: . .. :.:::::::::::.:.::: ..:.::::::::: .:: CCDS98 QRQLRRRGALPQESLKDAGQCEVDSLAGWKPSVYYVMLILCTASILISCCASAMYTPIEG 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE5 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI :.: ::::::::.:::::::::::::.: :..:::::..::.:::.:::::::::::::: CCDS98 WSYFDSLYFCFVAFSTIGFGDLVSSQNAHYESQGLYRFANFVFILMGVCCIYSLFNVISI 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE5 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE :::: :::.:::.. :: .: : .:::.. ::: : .. .: .: .::.. CCDS98 LIKQSLNWILRKMDSGCCPQC--QRGLLRSRRNVVMPGSVRNRCNISIETDGVA-ESDTD 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN :::::::.:::.:: :.::.:::.::::::: ::: :... . .:.: :::::::..::: CCDS98 GRRLSGEMISMKDLLAANKASLAILQKQLSEMANGCPHQTSTLARDNEFSGGVGAFAIMN 340 350 360 370 380 390 430 pF1KE5 NRLAETSASR :::::::..: CCDS98 NRLAETSGDR 400 430 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:14:29 2016 done: Tue Nov 8 04:14:30 2016 Total Scan time: 3.210 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]