FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6255, 226 aa 1>>>pF1KE6255 226 - 226 aa - 226 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2791+/-0.000494; mu= 5.0831+/- 0.031 mean_var=123.0668+/-24.787, 0's: 0 Z-trim(111.7): 6 B-trim: 745 in 1/53 Lambda= 0.115612 statistics sampled from 20357 (20361) to 20357 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.239), width: 16 Scan time: 4.510 The best scores are: opt bits E(85289) NP_001687 (OMIM: 108746) V-type proton ATPase subu ( 226) 1080 191.2 1.2e-48 NP_001034455 (OMIM: 108746) V-type proton ATPase s ( 204) 898 160.9 1.5e-39 NP_001034456 (OMIM: 108746) V-type proton ATPase s ( 196) 523 98.3 9.6e-21 >>NP_001687 (OMIM: 108746) V-type proton ATPase subunit (226 aa) initn: 1097 init1: 1080 opt: 1080 Z-score: 994.6 bits: 191.2 E(85289): 1.2e-48 Smith-Waterman score: 1080; 76.4% identity (89.3% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK ::: :.::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV :::::::::: ::.. :::::::::::.:::.:::.::: :::..:.: :: ::: :: NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG :::: .:::: :::::: ::. ::.:::::::: : ... :.::::.:.:: . ::: NP_001 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 130 140 150 160 170 180 190 200 210 220 pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI ::.:.:...::::::::::::: :.: :::.: ::::::.::::. NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 190 200 210 220 >>NP_001034455 (OMIM: 108746) V-type proton ATPase subun (204 aa) initn: 955 init1: 891 opt: 898 Z-score: 831.2 bits: 160.9 E(85289): 1.5e-39 Smith-Waterman score: 898; 72.1% identity (87.8% similar) in 197 aa overlap (29-225:7-203) 10 20 30 40 50 60 pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK ... .::::::::::::::::::::::::::: NP_001 MALSDADVQKQAEEEFNIEKGRLVQTQRLKIMEYYEKK 10 20 30 70 80 90 100 110 120 pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV :::::::::: ::.. :::::::::::.:::.:::.::: :::..:.: :: ::: :: NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG :::: .:::: :::::: ::. ::.:::::::: : ... :.::::.:.:: . ::: NP_001 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 100 110 120 130 140 150 190 200 210 220 pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI ::.:.:...::::::::::::: :.: :::.: ::::::.::::. NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 160 170 180 190 200 >>NP_001034456 (OMIM: 108746) V-type proton ATPase subun (196 aa) initn: 954 init1: 522 opt: 523 Z-score: 493.4 bits: 98.3 E(85289): 9.6e-21 Smith-Waterman score: 894; 67.6% identity (78.7% similar) in 225 aa overlap (1-225:1-195) 10 20 30 40 50 60 pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK ::: :.::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV :::::::::: ::.. :::::::::::.:::. NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLIT---------------------------- 70 80 90 130 140 150 160 170 180 pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG :: .:::: :::::: ::. ::.:::::::: : ... :.::::.:.:: . ::: NP_001 --GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 100 110 120 130 140 150 190 200 210 220 pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI ::.:.:...::::::::::::: :.: :::.: ::::::.::::. NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 160 170 180 190 226 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:30:57 2016 done: Tue Nov 8 11:30:58 2016 Total Scan time: 4.510 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]