FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6368, 361 aa 1>>>pF1KE6368 361 - 361 aa - 361 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5710+/-0.000734; mu= 15.0894+/- 0.044 mean_var=67.5515+/-13.813, 0's: 0 Z-trim(108.8): 13 B-trim: 0 in 0/50 Lambda= 0.156048 statistics sampled from 10471 (10478) to 10471 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.322), width: 16 Scan time: 1.790 The best scores are: opt bits E(32554) CCDS1790.1 QPCT gene_id:25797|Hs108|chr2 ( 361) 2456 561.6 3.7e-160 CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19 ( 382) 1081 252.1 6e-67 CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19 ( 288) 672 159.9 2.4e-39 >>CCDS1790.1 QPCT gene_id:25797|Hs108|chr2 (361 aa) initn: 2456 init1: 2456 opt: 2456 Z-score: 2988.8 bits: 561.6 E(32554): 3.7e-160 Smith-Waterman score: 2456; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361) 10 20 30 40 50 60 pF1KE6 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH 310 320 330 340 350 360 pF1KE6 L : CCDS17 L >>CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19 (382 aa) initn: 1064 init1: 473 opt: 1081 Z-score: 1315.4 bits: 252.1 E(32554): 6e-67 Smith-Waterman score: 1081; 47.8% identity (71.4% similar) in 364 aa overlap (7-361:27-382) 10 20 30 pF1KE6 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAW---- ::.. ..:: :. :: .: . :.: CCDS12 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGS-AFYTIWSGWHRRT 10 20 30 40 50 40 50 60 70 80 90 pF1KE6 ---PEEKNYHQPAI--LNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI : .. . : : : . ::... . ...:.. :.:::. : :::::. .:. . CCDS12 EELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFL 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 MQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN .. : : : .:.: : ..:: : .:.:...::.: : :::.:::::::: : .. CCDS12 EATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPP-GS 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE6 RVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQD ::::::::::::..::::.::: : :. .. . ..:::.:.:::::. .:.:.: CCDS12 TPFVGATDSAVPCALLLELAQALD---LELSRAKKQAAPVTLQLLFLDGEEALKEWGPKD 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE6 SLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERL ::::::::: : : :: :: .......:..::::.::::::: . :: ..:::.:: CCDS12 SLYGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRL 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE6 QAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHT ..::..::.:.::..: : ::: : ..::::::::::::::::: .::: :::: CCDS12 RSIEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHT 300 310 320 330 340 350 340 350 360 pF1KE6 MDDNEENLDESTIDNLNKILQVFVLEYLHL :.: :: :. :: .:: ::. ::: : CCDS12 PADTEVNLHPPTVHNLCRILAVFLAEYLGL 360 370 380 >>CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19 (288 aa) initn: 772 init1: 473 opt: 672 Z-score: 819.7 bits: 159.9 E(32554): 2.4e-39 Smith-Waterman score: 672; 56.2% identity (77.5% similar) in 178 aa overlap (184-361:115-288) 160 170 180 190 200 210 pF1KE6 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL : . : ..:::.:.:::::. .:.:.::: CCDS54 VGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKAAP-VTLQLLFLDGEEALKEWGPKDSL 90 100 110 120 130 140 220 230 240 250 260 270 pF1KE6 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA ::::::: : : :: :: .......:..::::.::::::: . :: ..:::.::.. CCDS54 YGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 150 160 170 180 190 200 280 290 300 310 320 330 pF1KE6 IEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMD ::..::.:.::..: : ::: : ..::::::::::::::::: .::: :::: CCDS54 IEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPA 210 220 230 240 250 260 340 350 360 pF1KE6 DNEENLDESTIDNLNKILQVFVLEYLHL :.: :: :. :: .:: ::. ::: : CCDS54 DTEVNLHPPTVHNLCRILAVFLAEYLGL 270 280 361 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:32:03 2016 done: Tue Nov 8 12:32:03 2016 Total Scan time: 1.790 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]