FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3207, 477 aa 1>>>pF1KE3207 477 - 477 aa - 477 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0317+/-0.000777; mu= 14.5631+/- 0.047 mean_var=79.3982+/-15.788, 0's: 0 Z-trim(108.8): 11 B-trim: 0 in 0/52 Lambda= 0.143936 statistics sampled from 10470 (10475) to 10470 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.322), width: 16 Scan time: 2.740 The best scores are: opt bits E(32554) CCDS1768.1 TRMT61B gene_id:55006|Hs108|chr2 ( 477) 3243 682.9 1.9e-196 >>CCDS1768.1 TRMT61B gene_id:55006|Hs108|chr2 (477 aa) initn: 3243 init1: 3243 opt: 3243 Z-score: 3640.2 bits: 682.9 E(32554): 1.9e-196 Smith-Waterman score: 3243; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477) 10 20 30 40 50 60 pF1KE3 MLMAWCRGPVLLCLRQGLGTNSFLHGLGQEPFEGARSLCCRSSPRDLRDGEREHEAAQRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MLMAWCRGPVLLCLRQGLGTNSFLHGLGQEPFEGARSLCCRSSPRDLRDGEREHEAAQRK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 APGAESCPSLPLSISDIGTGCLSSLENLRLPTLREESSPRELEDSSGDQGRCGPTHQGSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 APGAESCPSLPLSISDIGTGCLSSLENLRLPTLREESSPRELEDSSGDQGRCGPTHQGSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DPSMLSQAQSATEVEERHVSPSCSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 DPSMLSQAQSATEVEERHVSPSCSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 VNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 VNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLD 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 SQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFLVKLRKVKPQLN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 SQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFLVKLRKVKPQLN 430 440 450 460 470 477 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:27:39 2016 done: Mon Nov 7 18:27:40 2016 Total Scan time: 2.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]