FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3019, 124 aa 1>>>pF1KE3019 124 - 124 aa - 124 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9833+/-0.000252; mu= 13.6981+/- 0.016 mean_var=72.9204+/-14.131, 0's: 0 Z-trim(122.7): 6 B-trim: 20 in 1/54 Lambda= 0.150193 statistics sampled from 41142 (41149) to 41142 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.482), width: 16 Scan time: 5.580 The best scores are: opt bits E(85289) NP_003344 (OMIM: 600945) urocortin preproprotein [ ( 124) 810 183.1 9.8e-47 XP_016868582 (OMIM: 122560) PREDICTED: corticolibe ( 196) 164 43.3 0.00019 XP_016868581 (OMIM: 122560) PREDICTED: corticolibe ( 196) 164 43.3 0.00019 XP_016868579 (OMIM: 122560) PREDICTED: corticolibe ( 196) 164 43.3 0.00019 XP_016868580 (OMIM: 122560) PREDICTED: corticolibe ( 196) 164 43.3 0.00019 NP_000747 (OMIM: 122560) corticoliberin preproprot ( 196) 164 43.3 0.00019 >>NP_003344 (OMIM: 600945) urocortin preproprotein [Homo (124 aa) initn: 810 init1: 810 opt: 810 Z-score: 960.1 bits: 183.1 E(85289): 9.8e-47 Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124) 10 20 30 40 50 60 pF1KE3 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD 70 80 90 100 110 120 pF1KE3 SVGK :::: NP_003 SVGK >>XP_016868582 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 195 init1: 141 opt: 164 Z-score: 200.9 bits: 43.3 E(85289): 0.00019 Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196) 30 40 50 60 70 80 pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS :::: : : :. : :: :: ..: XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP 110 120 130 140 150 90 100 110 120 pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK .:.:::::::: .::.::... ..:..:: ... .:: XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 160 170 180 190 >>XP_016868581 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 195 init1: 141 opt: 164 Z-score: 200.9 bits: 43.3 E(85289): 0.00019 Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196) 30 40 50 60 70 80 pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS :::: : : :. : :: :: ..: XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP 110 120 130 140 150 90 100 110 120 pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK .:.:::::::: .::.::... ..:..:: ... .:: XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 160 170 180 190 >>XP_016868579 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 195 init1: 141 opt: 164 Z-score: 200.9 bits: 43.3 E(85289): 0.00019 Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196) 30 40 50 60 70 80 pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS :::: : : :. : :: :: ..: XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP 110 120 130 140 150 90 100 110 120 pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK .:.:::::::: .::.::... ..:..:: ... .:: XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 160 170 180 190 >>XP_016868580 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 195 init1: 141 opt: 164 Z-score: 200.9 bits: 43.3 E(85289): 0.00019 Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196) 30 40 50 60 70 80 pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS :::: : : :. : :: :: ..: XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP 110 120 130 140 150 90 100 110 120 pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK .:.:::::::: .::.::... ..:..:: ... .:: XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 160 170 180 190 >>NP_000747 (OMIM: 122560) corticoliberin preproprotein (196 aa) initn: 195 init1: 141 opt: 164 Z-score: 200.9 bits: 43.3 E(85289): 0.00019 Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196) 30 40 50 60 70 80 pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS :::: : : :. : :: :: ..: NP_000 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP 110 120 130 140 150 90 100 110 120 pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK .:.:::::::: .::.::... ..:..:: ... .:: NP_000 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 160 170 180 190 124 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:36:10 2016 done: Sun Nov 6 18:36:11 2016 Total Scan time: 5.580 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]