(Circular) (Six-base) MAPSORT of: pFN21AE9249.seq Check: 7563 from: 1 to: 5125 pFN21AE9249 5125 bp With 182 enzymes: SgfI * December 28, 2011 15:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2935 278 Size: 53 83 186 936 1399 2468 Fragments arranged by size: 2468 1399 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2468 1937 Size: 531 4594 Acc65I G'GTAC_C Cuts at: 2446 2446 Size: 5125 AclI AA'CG_TT Cuts at: 1563 3252 3625 1563 Size: 1689 373 3063 Fragments arranged by size: 3063 1689 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2150 2188 3188 4572 4840 1632 Size: 518 38 1000 1384 268 1917 Fragments arranged by size: 1917 1384 1000 518 268 38 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4928 AflIII A'CryG_T Cuts at: 1203 4024 5001 1203 Size: 2821 977 1327 Fragments arranged by size: 2821 1327 977 AgeI A'CCGG_T Cuts at: 3956 3956 Size: 5125 AhdI GACnn_n'nnGTC Cuts at: 3854 3854 Size: 5125 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5125 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5125 AlwNI CAG_nnn'CTG Cuts at: 2868 4440 2868 Size: 1572 3553 ApaI G_GGCC'C Cuts at: 2012 2096 2012 Size: 84 5041 ApaLI G'TGCA_C Cuts at: 3182 4338 3182 Size: 1156 3969 ApoI r'AATT_y Cuts at: 1493 2234 2434 2660 2812 4921 1493 Size: 741 200 226 152 2109 1697 Fragments arranged by size: 2109 1697 741 226 200 152 AseI AT'TA_AT Cuts at: 160 1032 3679 160 Size: 872 2647 1606 Fragments arranged by size: 2647 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5125 AvaI C'yCGr_G Cuts at: 1870 1943 2033 2041 2056 2450 1870 Size: 73 90 8 15 394 4545 Fragments arranged by size: 4545 394 90 73 15 8 BamHI G'GATC_C Cuts at: 2397 2455 2822 2397 Size: 58 367 4700 Fragments arranged by size: 4700 367 58 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2446 3901 618 Size: 325 217 627 659 1455 1842 Fragments arranged by size: 1842 1455 659 627 325 217 BanII G_rGCy'C Cuts at: 1391 2012 2063 2096 2444 1391 Size: 621 51 33 348 4072 Fragments arranged by size: 4072 621 348 51 33 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4154 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3316 3350 1903 Size: 34 1379 34 3678 Fragments arranged by size: 3678 1379 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3017 4227 3017 Size: 1210 3915 BclI T'GATC_A Cuts at: 1548 1548 Size: 5125 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2279 3736 136 Size: 107 122 71 631 605 607 1457 1525 Fragments arranged by size: 1525 1457 631 607 605 122 107 71 BglII A'GATC_T Cuts at: 5120 5120 Size: 5125 BlpI GC'TnA_GC Cuts at: 2542 2542 Size: 5125 Bme1580I G_kGCm'C Cuts at: 1790 2012 2096 3186 4342 1790 Size: 222 84 1090 1156 2573 Fragments arranged by size: 2573 1156 1090 222 84 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5125 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2856 3814 442 Size: 416 53 83 399 24 1439 958 1753 Fragments arranged by size: 1753 1439 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5125 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2381 2381 Size: 5125 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3785 1239 Size: 2546 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2429 3250 4115 4413 2429 Size: 821 865 298 3141 Fragments arranged by size: 3141 865 821 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3788 882 Size: 617 2289 2219 Fragments arranged by size: 2289 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2916 493 Size: 711 1712 2702 Fragments arranged by size: 2702 1712 711 BsaBI GATnn'nnATC Cuts at: 5119 5119 Size: 5125 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2328 2932 3314 3949 Size: 53 83 186 936 795 604 382 635 Cuts at: 3949 275 Size: 1451 Fragments arranged by size: 1451 936 795 635 604 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3558 3956 4230 4377 4788 3558 Size: 398 274 147 411 3895 Fragments arranged by size: 3895 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2125 2155 1178 Size: 30 165 30 722 30 4148 Fragments arranged by size: 4148 722 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2059 2327 2426 1186 Size: 873 268 99 3885 Fragments arranged by size: 3885 873 268 99 BseYI C'CCAG_C Cuts at: 4328 4824 4328 Size: 496 4629 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4552 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2575 3336 4364 1540 Size: 275 186 574 761 1028 2301 Fragments arranged by size: 2301 1028 761 574 275 186 BsiHKAI G_wGCw'C Cuts at: 2177 3186 3271 4342 2177 Size: 1009 85 1071 2960 Fragments arranged by size: 2960 1071 1009 85 BsmI GAATG_Cn' Cuts at: 2636 2729 2636 Size: 93 5032 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2012 2063 2096 2177 2444 3186 3271 Size: 399 222 51 33 81 267 742 85 Cuts at: 3271 4342 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 399 267 222 85 81 51 33 BspEI T'CCGG_A Cuts at: 4788 4788 Size: 5125 BspHI T'CATG_A Cuts at: 3014 4744 3014 Size: 1730 3395 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2480 844 Size: 1636 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3012 1394 Size: 429 1189 3507 Fragments arranged by size: 3507 1189 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3620 3794 65 Size: 1183 2372 174 1396 Fragments arranged by size: 2372 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3769 3956 1700 Size: 110 1959 187 2869 Fragments arranged by size: 2869 1959 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5125 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5125 BssSI C'ACGA_G Cuts at: 2241 3185 4197 2241 Size: 944 1012 3169 Fragments arranged by size: 3169 1012 944 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5125 BstBI TT'CG_AA Cuts at: 3929 3929 Size: 5125 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5125 BstYI r'GATC_y Cuts at: 1972 2154 2397 2455 2822 3207 3224 4676 4762 Size: 182 243 58 367 385 17 1452 86 Cuts at: 4762 4774 5120 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 243 182 86 58 17 12 Bsu36I CC'TnA_GG Cuts at: 2101 2101 Size: 5125 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3634 Fragments arranged by size: 3634 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4386 Fragments arranged by size: 4386 683 56 BtsI GCAGTG_nn' Cuts at: 2641 3435 3455 2641 Size: 794 20 4311 Fragments arranged by size: 4311 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5125 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5090 DraI TTT'AAA Cuts at: 2429 2429 Size: 5125 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4132 809 Size: 507 2816 1802 Fragments arranged by size: 2816 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2572 3461 5090 Size: 54 1425 50 275 18 742 889 1629 Cuts at: 5090 8 Size: 43 Fragments arranged by size: 1629 1425 889 742 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2572 1537 Size: 275 760 4090 Fragments arranged by size: 4090 760 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2165 2372 3055 1353 Size: 812 207 683 3423 Fragments arranged by size: 3423 812 683 207 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2146 3712 4086 4232 387 Size: 1064 138 557 1566 374 146 1280 Fragments arranged by size: 1566 1280 1064 557 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2150 2188 3188 3785 4572 4840 1239 Size: 393 518 38 1000 597 787 268 1524 Fragments arranged by size: 1524 1000 787 597 518 393 268 38 EcoNI CCTnn'n_nnAGG Cuts at: 2288 2411 2288 Size: 123 5002 EcoO109I rG'GnC_Cy Cuts at: 2038 2092 2093 2272 2404 2038 Size: 54 1 179 132 4759 Fragments arranged by size: 4759 179 132 54 1 EcoRI G'AATT_C Cuts at: 2434 2812 2434 Size: 378 4747 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2218 2218 Size: 5125 FspI TGC'GCA Cuts at: 3631 3631 Size: 5125 HaeII r_GCGC'y Cuts at: 1678 2109 4272 1678 Size: 431 2163 2531 Fragments arranged by size: 2531 2163 431 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3766 3798 3840 3872 1373 Size: 32 135 32 2194 32 42 32 2626 Fragments arranged by size: 2626 2194 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2469 2715 669 Size: 988 281 531 246 3079 Fragments arranged by size: 3079 988 531 281 246 HindIII A'AGCT_T Cuts at: 748 2162 748 Size: 1414 3711 HpaI GTT'AAC Cuts at: 2715 2715 Size: 5125 KpnI G_GTAC'C Cuts at: 2450 2450 Size: 5125 MfeI C'AATT_G Cuts at: 2257 2724 2257 Size: 467 4658 MluI A'CGCG_T Cuts at: 5001 5001 Size: 5125 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4239 4423 1305 Size: 2934 184 2007 Fragments arranged by size: 2934 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3303 Fragments arranged by size: 3303 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3083 3442 3601 518 Size: 648 1917 359 159 2042 Fragments arranged by size: 2042 1917 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2541 3218 4366 4611 1606 Size: 935 677 1148 245 2120 Fragments arranged by size: 2120 1148 935 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3634 Fragments arranged by size: 3634 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5125 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5125 NotI GC'GGCC_GC Cuts at: 2572 2572 Size: 5125 NspI r_CATG'y Cuts at: 1132 1229 2351 2483 4028 1132 Size: 97 1122 132 1545 2229 Fragments arranged by size: 2229 1545 1122 132 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5125 PciI A'CATG_T Cuts at: 4024 4024 Size: 5125 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5125 PmeI GTTT'AAAC Cuts at: 2429 2429 Size: 5125 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3194 3226 4707 4739 3194 Size: 32 1481 32 3580 Fragments arranged by size: 3580 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5125 PsiI TTA'TAA Cuts at: 2695 2695 Size: 5125 PspOMI G'GGCC_C Cuts at: 2008 2092 2008 Size: 84 5041 PstI C_TGCA'G Cuts at: 830 2477 830 Size: 1647 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5125 SalI G'TCGA_C Cuts at: 1936 2467 1936 Size: 531 4594 SapI GCTCTTCn'nnn_ Cuts at: 2165 2165 Size: 5125 SbfI CC_TGCA'GG Cuts at: 2477 2477 Size: 5125 ScaI AGT'ACT Cuts at: 3373 5085 3373 Size: 1712 3413 SfcI C'TryA_G Cuts at: 826 1045 2473 3608 4289 4480 826 Size: 219 1428 1135 681 191 1471 Fragments arranged by size: 1471 1428 1135 681 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2279 2279 Size: 5125 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5125 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5125 SmaI CCC'GGG Cuts at: 1872 2452 1872 Size: 580 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2408 3229 4130 4392 820 Size: 197 926 465 821 901 262 1553 Fragments arranged by size: 1553 926 901 821 465 262 197 SnaBI TAC'GTA Cuts at: 493 2916 493 Size: 2423 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5125 SphI G_CATG'C Cuts at: 1132 2483 1132 Size: 1351 3774 SspI AAT'ATT Cuts at: 5 52 3049 5 Size: 47 2997 2081 Fragments arranged by size: 2997 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5125 StyI C'CwwG_G Cuts at: 513 1065 2004 2564 513 Size: 552 939 560 3074 Fragments arranged by size: 3074 939 560 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3152 3169 3322 3507 3952 325 Size: 1255 1572 17 153 185 445 1498 Fragments arranged by size: 1572 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3371 5083 96 Size: 274 80 33 51 1443 1394 1712 138 Fragments arranged by size: 1712 1443 1394 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5085 5117 5085 Size: 32 5093 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5125 XbaI T'CTAG_A Cuts at: 2461 2461 Size: 5125 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5125 XmaI C'CCGG_G Cuts at: 1870 2450 1870 Size: 580 4545 XmnI GAAnn'nnTTC Cuts at: 2304 3254 2304 Size: 950 4175 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2933 276 Size: 53 83 186 936 1399 2468 Fragments arranged by size: 2468 1399 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SapI SbfI ScaI SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfoI SrfI SwaI XcmI