FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9249, 140 aa 1>>>pF1KE9249 140 - 140 aa - 140 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7879+/-0.000251; mu= 6.8783+/- 0.016 mean_var=122.2273+/-24.117, 0's: 0 Z-trim(124.1): 17 B-trim: 379 in 2/59 Lambda= 0.116009 statistics sampled from 45060 (45077) to 45060 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.529), width: 16 Scan time: 4.040 The best scores are: opt bits E(85289) NP_001800 (OMIM: 117139) histone H3-like centromer ( 140) 943 167.1 8.5e-42 NP_001035891 (OMIM: 117139) histone H3-like centro ( 114) 497 92.4 2.1e-19 NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136) 376 72.2 3.1e-13 NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13 NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136) 373 71.7 4.3e-13 NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136) 373 71.7 4.3e-13 NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136) 365 70.3 1.1e-12 NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135) 350 67.8 6.2e-12 >>NP_001800 (OMIM: 117139) histone H3-like centromeric p (140 aa) initn: 943 init1: 943 opt: 943 Z-score: 871.4 bits: 167.1 E(85289): 8.5e-42 Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 70 80 90 100 110 120 130 140 pF1KE9 LFPKDVQLARRIRGLEEGLG :::::::::::::::::::: NP_001 LFPKDVQLARRIRGLEEGLG 130 140 >>NP_001035891 (OMIM: 117139) histone H3-like centromeri (114 aa) initn: 562 init1: 497 opt: 497 Z-score: 469.2 bits: 92.4 E(85289): 2.1e-19 Smith-Waterman score: 706; 81.4% identity (81.4% similar) in 140 aa overlap (1-140:1-114) 10 20 30 40 50 60 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT ::::::::::: ::::::::::::::::::::::: NP_001 LIRKLPFSRLA--------------------------AEAFLVHLFEDAYLLTLHAGRVT 70 80 90 130 140 pF1KE9 LFPKDVQLARRIRGLEEGLG :::::::::::::::::::: NP_001 LFPKDVQLARRIRGLEEGLG 100 110 >>NP_066403 (OMIM: 142780) histone H3.2 [Homo sapiens] (136 aa) initn: 349 init1: 219 opt: 376 Z-score: 358.7 bits: 72.2 E(85289): 3.1e-13 Smith-Waterman score: 376; 50.8% identity (74.2% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_066 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..:::::.::.:: ::::. : .. NP_066 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_066 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_066 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_066 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_066 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 >>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens] (136 aa) initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13 Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133) 10 20 30 40 50 pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL :.: .:::.. : . . .:. :. .. : : : : :.:::. NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL ::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : .. NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI 60 70 80 90 100 110 120 130 140 pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG :: :::..:::.:::::::: NP_003 HAKRVTIMPKDIQLARRIRGERA 120 130 140 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:36:43 2016 done: Sun Nov 6 18:36:43 2016 Total Scan time: 4.040 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]