Result of FASTA (ccds) for
pFN21AE9249
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9249, 140 aa
1>>>pF1KE9249 140 - 140 aa - 140 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5299+/-0.000628; mu= 8.5827+/- 0.038
mean_var=122.4602+/-24.230, 0's: 0 Z-trim(116.4): 19 B-trim: 178 in 1/54
Lambda= 0.115898
statistics sampled from 17049 (17068) to 17049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.524), width: 16
Scan time: 1.840
The best scores are: opt bits E(32554)
CCDS1729.1 CENPA gene_id:1058|Hs108|chr2 ( 140) 943 166.9 3.7e-42
CCDS42662.1 CENPA gene_id:1058|Hs108|chr2 ( 114) 497 92.2 9e-20
CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 ( 136) 376 72.1 1.3e-13
CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 ( 136) 376 72.1 1.3e-13
CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 ( 136) 376 72.1 1.3e-13
CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4636.1 HIST1H3I gene_id:8354|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4596.1 HIST1H3E gene_id:8353|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4573.1 HIST1H3B gene_id:8358|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4638.1 HIST1H3J gene_id:8356|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4627.1 HIST1H3H gene_id:8357|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4590.1 HIST1H3D gene_id:8351|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4602.1 HIST1H3G gene_id:8355|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS4576.1 HIST1H3C gene_id:8352|Hs108|chr6 ( 136) 374 71.7 1.6e-13
CCDS1550.1 H3F3A gene_id:3020|Hs108|chr1 ( 136) 373 71.5 1.8e-13
CCDS11729.1 H3F3B gene_id:3021|Hs108|chr17 ( 136) 373 71.5 1.8e-13
CCDS1572.1 HIST3H3 gene_id:8290|Hs108|chr1 ( 136) 365 70.2 4.5e-13
CCDS31769.1 H3F3C gene_id:440093|Hs108|chr12 ( 135) 350 67.7 2.6e-12
>>CCDS1729.1 CENPA gene_id:1058|Hs108|chr2 (140 aa)
initn: 943 init1: 943 opt: 943 Z-score: 870.3 bits: 166.9 E(32554): 3.7e-42
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
70 80 90 100 110 120
130 140
pF1KE9 LFPKDVQLARRIRGLEEGLG
::::::::::::::::::::
CCDS17 LFPKDVQLARRIRGLEEGLG
130 140
>>CCDS42662.1 CENPA gene_id:1058|Hs108|chr2 (114 aa)
initn: 562 init1: 497 opt: 497 Z-score: 468.4 bits: 92.2 E(32554): 9e-20
Smith-Waterman score: 706; 81.4% identity (81.4% similar) in 140 aa overlap (1-140:1-114)
10 20 30 40 50 60
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
::::::::::: :::::::::::::::::::::::
CCDS42 LIRKLPFSRLA--------------------------AEAFLVHLFEDAYLLTLHAGRVT
70 80 90
130 140
pF1KE9 LFPKDVQLARRIRGLEEGLG
::::::::::::::::::::
CCDS42 LFPKDVQLARRIRGLEEGLG
100 110
>>CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 (136 aa)
initn: 349 init1: 219 opt: 376 Z-score: 358.1 bits: 72.1 E(32554): 1.3e-13
Smith-Waterman score: 376; 50.8% identity (74.2% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS30 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..:::::.::.:: ::::. : ..
CCDS30 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS30 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 (136 aa)
initn: 349 init1: 219 opt: 376 Z-score: 358.1 bits: 72.1 E(32554): 1.3e-13
Smith-Waterman score: 376; 50.8% identity (74.2% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS41 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..:::::.::.:: ::::. : ..
CCDS41 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS41 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 (136 aa)
initn: 349 init1: 219 opt: 376 Z-score: 358.1 bits: 72.1 E(32554): 1.3e-13
Smith-Waterman score: 376; 50.8% identity (74.2% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS30 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..:::::.::.:: ::::. : ..
CCDS30 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS30 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.3 bits: 71.7 E(32554): 1.6e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS46 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
CCDS46 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS46 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.3 bits: 71.7 E(32554): 1.6e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS45 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
CCDS45 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS45 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS4636.1 HIST1H3I gene_id:8354|Hs108|chr6 (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.3 bits: 71.7 E(32554): 1.6e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS46 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
CCDS46 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS46 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS4596.1 HIST1H3E gene_id:8353|Hs108|chr6 (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.3 bits: 71.7 E(32554): 1.6e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS45 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
CCDS45 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS45 HAKRVTIMPKDIQLARRIRGERA
120 130
>>CCDS4573.1 HIST1H3B gene_id:8358|Hs108|chr6 (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.3 bits: 71.7 E(32554): 1.6e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
CCDS45 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
CCDS45 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
CCDS45 HAKRVTIMPKDIQLARRIRGERA
120 130
140 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:36:42 2016 done: Sun Nov 6 18:36:42 2016
Total Scan time: 1.840 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]