FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9428, 399 aa 1>>>pF1KE9428 399 - 399 aa - 399 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6283+/-0.000343; mu= 12.1242+/- 0.021 mean_var=115.3579+/-23.442, 0's: 0 Z-trim(117.8): 15 B-trim: 0 in 0/51 Lambda= 0.119413 statistics sampled from 30117 (30131) to 30117 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.353), width: 16 Scan time: 8.740 The best scores are: opt bits E(85289) NP_003263 (OMIM: 604658) integral membrane protein ( 399) 2706 476.9 3.8e-134 XP_016857698 (OMIM: 604658) PREDICTED: integral me ( 379) 2459 434.3 2.4e-121 XP_016857699 (OMIM: 604658) PREDICTED: integral me ( 356) 1864 331.8 1.6e-90 >>NP_003263 (OMIM: 604658) integral membrane protein GPR (399 aa) initn: 2706 init1: 2706 opt: 2706 Z-score: 2529.3 bits: 476.9 E(85289): 3.8e-134 Smith-Waterman score: 2706; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399) 10 20 30 40 50 60 pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG 310 320 330 340 350 360 370 380 390 pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG ::::::::::::::::::::::::::::::::::::::: NP_003 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG 370 380 390 >>XP_016857698 (OMIM: 604658) PREDICTED: integral membra (379 aa) initn: 2459 init1: 2459 opt: 2459 Z-score: 2299.7 bits: 434.3 E(85289): 2.4e-121 Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364) 10 20 30 40 50 60 pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG 310 320 330 340 350 360 370 380 390 pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG :::: XP_016 LQGGDRSTEEKLGEYMLSQ 370 >>XP_016857699 (OMIM: 604658) PREDICTED: integral membra (356 aa) initn: 1864 init1: 1864 opt: 1864 Z-score: 1746.1 bits: 331.8 E(85289): 1.6e-90 Smith-Waterman score: 2326; 89.2% identity (89.2% similar) in 399 aa overlap (1-399:1-356) 10 20 30 40 50 60 pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV ::::::::::::::::::::::::::::::::::::::: XP_016 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQ--------------------- 250 260 270 310 320 330 340 350 360 pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG :::::::::::::::::::::::::::::::::::::: XP_016 ----------------------TNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG 280 290 300 310 370 380 390 pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG ::::::::::::::::::::::::::::::::::::::: XP_016 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG 320 330 340 350 399 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:37:44 2016 done: Sun Nov 6 18:37:46 2016 Total Scan time: 8.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]