FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6286, 290 aa 1>>>pF1KE6286 290 - 290 aa - 290 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2610+/-0.000464; mu= 10.1184+/- 0.029 mean_var=76.3873+/-15.789, 0's: 0 Z-trim(109.6): 23 B-trim: 1025 in 1/48 Lambda= 0.146745 statistics sampled from 17766 (17768) to 17766 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.208), width: 16 Scan time: 5.670 The best scores are: opt bits E(85289) NP_005990 (OMIM: 602964) translin-associated prote ( 290) 1890 409.9 2.9e-114 NP_004613 (OMIM: 600575) translin isoform 1 [Homo ( 228) 171 46.0 8.2e-05 >>NP_005990 (OMIM: 602964) translin-associated protein X (290 aa) initn: 1890 init1: 1890 opt: 1890 Z-score: 2172.5 bits: 409.9 E(85289): 2.9e-114 Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290) 10 20 30 40 50 60 pF1KE6 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS :::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS 250 260 270 280 290 >>NP_004613 (OMIM: 600575) translin isoform 1 [Homo sapi (228 aa) initn: 188 init1: 126 opt: 171 Z-score: 207.4 bits: 46.0 E(85289): 8.2e-05 Smith-Waterman score: 228; 25.8% identity (59.4% similar) in 229 aa overlap (39-264:7-216) 10 20 30 40 50 60 pF1KE6 GFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESK : .: : :..: :.. :. ... .. NP_004 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAR 10 20 30 70 80 90 100 110 120 pF1KE6 RTIFLLHRITSAPDMEDI---LTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQ . . ::. . .. ..:: ... .. :. .. .. .. .:....::. :: NP_004 EILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQ 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 EYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPV . : ..: ...:..:.. . ... : : : : :.. : ..: : NP_004 RLVFLAAFVVYLETETLVTREAVTEIL-------GIE---P-----DREKG-FHLDVE-- 100 110 120 130 190 200 210 220 230 240 pF1KE6 DYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYT ::: :: :..:: :. .::: :: . :...: :. .. .:: .. : . :. NP_004 DYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLL-NLKNDSLRKRYDG 140 150 160 170 180 190 250 260 270 280 290 pF1KE6 LKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS :: .. :::.. : :..:: NP_004 LKYDVKKVEEVVYDLSIRGFNKETAAACVEK 200 210 220 290 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:47:40 2016 done: Tue Nov 8 11:47:41 2016 Total Scan time: 5.670 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]