FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8898, 232 aa 1>>>pF1KB8898 232 - 232 aa - 232 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.8368+/-0.000879; mu= 4.1743+/- 0.054 mean_var=392.3536+/-79.466, 0's: 0 Z-trim(118.2): 81 B-trim: 0 in 0/54 Lambda= 0.064749 statistics sampled from 19062 (19148) to 19062 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.588), width: 16 Scan time: 2.510 The best scores are: opt bits E(32554) CCDS1552.1 MIXL1 gene_id:83881|Hs108|chr1 ( 232) 1595 161.4 4.5e-40 CCDS60432.1 MIXL1 gene_id:83881|Hs108|chr1 ( 240) 1569 159.0 2.5e-39 >>CCDS1552.1 MIXL1 gene_id:83881|Hs108|chr1 (232 aa) initn: 1595 init1: 1595 opt: 1595 Z-score: 833.0 bits: 161.4 E(32554): 4.5e-40 Smith-Waterman score: 1595; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KB8 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 190 200 210 220 230 >>CCDS60432.1 MIXL1 gene_id:83881|Hs108|chr1 (240 aa) initn: 1058 init1: 891 opt: 1569 Z-score: 819.7 bits: 159.0 E(32554): 2.5e-39 Smith-Waterman score: 1569; 96.7% identity (96.7% similar) in 240 aa overlap (1-232:1-240) 10 20 30 40 50 60 pF1KB8 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 ALTLLPESRIQ--------VWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLK ::::::::::: ::::::::::::::::::::::::::::::::::::::::: CCDS60 ALTLLPESRIQLLFSPLFQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB8 PQLPLEVDVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PQLPLEVDVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 190 200 210 220 230 240 232 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:46:32 2016 done: Mon Nov 7 17:46:33 2016 Total Scan time: 2.510 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]