FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5151, 86 aa 1>>>pF1KE5151 86 - 86 aa - 86 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7556+/-0.000682; mu= 10.4159+/- 0.041 mean_var=47.1871+/- 9.522, 0's: 0 Z-trim(107.5): 4 B-trim: 689 in 2/51 Lambda= 0.186708 statistics sampled from 9588 (9590) to 9588 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.295), width: 16 Scan time: 1.320 The best scores are: opt bits E(32554) CCDS1546.1 SRP9 gene_id:6726|Hs108|chr1 ( 86) 565 159.1 3e-40 CCDS44323.1 SRP9 gene_id:6726|Hs108|chr1 ( 82) 322 93.7 1.5e-20 >>CCDS1546.1 SRP9 gene_id:6726|Hs108|chr1 (86 aa) initn: 565 init1: 565 opt: 565 Z-score: 836.0 bits: 159.1 E(32554): 3e-40 Smith-Waterman score: 565; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 10 20 30 40 50 60 70 80 pF1KE5 KIEKFHSQLMRLMVAKEARNVTMETE :::::::::::::::::::::::::: CCDS15 KIEKFHSQLMRLMVAKEARNVTMETE 70 80 >>CCDS44323.1 SRP9 gene_id:6726|Hs108|chr1 (82 aa) initn: 324 init1: 318 opt: 322 Z-score: 482.6 bits: 93.7 E(32554): 1.5e-20 Smith-Waterman score: 322; 96.1% identity (96.1% similar) in 51 aa overlap (1-49:1-51) 10 20 30 40 50 pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV--CLVYKTDQAQD ::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS44 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS 10 20 30 40 50 60 60 70 80 pF1KE5 VKKIEKFHSQLMRLMVAKEARNVTMETE CCDS44 GMIIAHCILDLLGSSGPLASAS 70 80 86 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:00:23 2016 done: Mon Nov 7 22:00:24 2016 Total Scan time: 1.320 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]