FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3278, 696 aa 1>>>pF1KE3278 696 - 696 aa - 696 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1788+/-0.000498; mu= 14.9309+/- 0.031 mean_var=79.5242+/-15.892, 0's: 0 Z-trim(108.5): 38 B-trim: 0 in 0/55 Lambda= 0.143822 statistics sampled from 16597 (16612) to 16597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.539), E-opt: 0.2 (0.195), width: 16 Scan time: 10.710 The best scores are: opt bits E(85289) NP_004727 (OMIM: 605237,616413) xenotropic and pol ( 696) 4670 979.6 0 NP_001315591 (OMIM: 605237,616413) xenotropic and ( 503) 3345 704.6 2.3e-202 NP_001129141 (OMIM: 605237,616413) xenotropic and ( 631) 2907 613.7 6.6e-175 >>NP_004727 (OMIM: 605237,616413) xenotropic and polytro (696 aa) initn: 4670 init1: 4670 opt: 4670 Z-score: 5237.5 bits: 979.6 E(85289): 0 Smith-Waterman score: 4670; 100.0% identity (100.0% similar) in 696 aa overlap (1-696:1-696) 10 20 30 40 50 60 pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS 610 620 630 640 650 660 670 680 690 pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT :::::::::::::::::::::::::::::::::::: NP_004 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT 670 680 690 >>NP_001315591 (OMIM: 605237,616413) xenotropic and poly (503 aa) initn: 3345 init1: 3345 opt: 3345 Z-score: 3753.9 bits: 704.6 E(85289): 2.3e-202 Smith-Waterman score: 3345; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500) 10 20 30 40 50 60 pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN :::::::::::::::::::: NP_001 GKYSTTFFMVTFAALYSTHKGIL 490 500 >>NP_001129141 (OMIM: 605237,616413) xenotropic and poly (631 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 3261.2 bits: 613.7 E(85289): 6.6e-175 Smith-Waterman score: 4079; 90.7% identity (90.7% similar) in 696 aa overlap (1-696:1-631) 10 20 30 40 50 60 pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA :::::::::::::::: NP_001 LKWDESKGLLPNNSEE-------------------------------------------- 430 490 500 510 520 530 540 pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN ::::::::::::::::::::::::::::::::::::::: NP_001 ---------------------RGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN 440 450 460 470 550 560 570 580 590 600 pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE 480 490 500 510 520 530 610 620 630 640 650 660 pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS 540 550 560 570 580 590 670 680 690 pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT :::::::::::::::::::::::::::::::::::: NP_001 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT 600 610 620 630 696 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:46:21 2016 done: Sun Nov 6 18:46:22 2016 Total Scan time: 10.710 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]