FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5779, 645 aa 1>>>pF1KE5779 645 - 645 aa - 645 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0113+/-0.000973; mu= 15.4604+/- 0.058 mean_var=72.5221+/-14.728, 0's: 0 Z-trim(104.8): 19 B-trim: 0 in 0/49 Lambda= 0.150605 statistics sampled from 8100 (8111) to 8100 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.249), width: 16 Scan time: 3.490 The best scores are: opt bits E(32554) CCDS1311.1 DARS2 gene_id:55157|Hs108|chr1 ( 645) 4326 949.6 0 CCDS10923.1 KARS gene_id:3735|Hs108|chr16 ( 597) 270 68.3 3.3e-11 CCDS45532.1 KARS gene_id:3735|Hs108|chr16 ( 625) 270 68.4 3.5e-11 >>CCDS1311.1 DARS2 gene_id:55157|Hs108|chr1 (645 aa) initn: 4326 init1: 4326 opt: 4326 Z-score: 5076.9 bits: 949.6 E(32554): 0 Smith-Waterman score: 4326; 100.0% identity (100.0% similar) in 645 aa overlap (1-645:1-645) 10 20 30 40 50 60 pF1KE5 MYFPSWLSQLYRGLSRPIRRTTQPIWGSLYRSLLQSSQRRIPEFSSFVVRTNTCGELRSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MYFPSWLSQLYRGLSRPIRRTTQPIWGSLYRSLLQSSQRRIPEFSSFVVRTNTCGELRSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 HLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 FQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 FQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDAL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIME 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 SQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLW 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 VVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 IRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRD 550 560 570 580 590 600 610 620 630 640 pF1KE5 VIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKPTDSKAERAH ::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKPTDSKAERAH 610 620 630 640 >>CCDS10923.1 KARS gene_id:3735|Hs108|chr16 (597 aa) initn: 258 init1: 120 opt: 270 Z-score: 314.6 bits: 68.3 E(32554): 3.3e-11 Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (129-301:185-358) 100 110 120 130 140 150 pF1KE5 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP : :: : ::. : ::. : . :: CCDS10 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE5 FEIKNFVKKTEALRLQYRYLDL--RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT .: : . : . ::::: .: : .. .::... .: .: .: ::..:::: CCDS10 HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP- 220 230 240 250 260 220 230 240 250 260 270 pF1KE5 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP ... :::: : :.. : . .:. ....:.:::.:: ....: .:.:: CCDS10 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 270 280 290 300 310 320 280 290 300 310 320 330 pF1KE5 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK ..:::: .. :...: .. . : .. CCDS10 THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP 330 340 350 360 370 380 >>CCDS45532.1 KARS gene_id:3735|Hs108|chr16 (625 aa) initn: 224 init1: 120 opt: 270 Z-score: 314.3 bits: 68.4 E(32554): 3.5e-11 Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (129-301:213-386) 100 110 120 130 140 150 pF1KE5 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP : :: : ::. : ::. : . :: CCDS45 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP 190 200 210 220 230 240 160 170 180 190 200 210 pF1KE5 FEIKNFVKKTEALRLQYRYLDL--RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT .: : . : . ::::: .: : .. .::... .: .: .: ::..:::: CCDS45 HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP- 250 260 270 280 290 220 230 240 250 260 270 pF1KE5 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP ... :::: : :.. : . .:. ....:.:::.:: ....: .:.:: CCDS45 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 300 310 320 330 340 350 280 290 300 310 320 330 pF1KE5 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK ..:::: .. :...: .. . : .. CCDS45 THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP 360 370 380 390 400 410 645 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:34:41 2016 done: Tue Nov 8 06:34:41 2016 Total Scan time: 3.490 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]