FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1821, 335 aa 1>>>pF1KE1821 335 - 335 aa - 335 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1753+/-0.000298; mu= 13.5614+/- 0.019 mean_var=97.4473+/-19.638, 0's: 0 Z-trim(119.8): 1 B-trim: 0 in 0/55 Lambda= 0.129924 statistics sampled from 34238 (34239) to 34238 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.401), width: 16 Scan time: 8.950 The best scores are: opt bits E(85289) NP_444281 (OMIM: 612763) transcriptional adapter 1 ( 335) 2255 432.3 6.9e-121 >>NP_444281 (OMIM: 612763) transcriptional adapter 1 [Ho (335 aa) initn: 2255 init1: 2255 opt: 2255 Z-score: 2291.4 bits: 432.3 E(85289): 6.9e-121 Smith-Waterman score: 2255; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE1 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_444 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_444 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_444 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_444 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_444 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN 250 260 270 280 290 300 310 320 330 pF1KE1 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC ::::::::::::::::::::::::::::::::::: NP_444 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC 310 320 330 335 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:49:43 2016 done: Sun Nov 6 18:49:44 2016 Total Scan time: 8.950 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]