FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1821, 335 aa
  1>>>pF1KE1821 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1466+/-0.000708; mu= 13.8375+/- 0.043
 mean_var=95.3536+/-18.857, 0's: 0 Z-trim(112.3): 2  B-trim: 0 in 0/51
 Lambda= 0.131343
 statistics sampled from 13050 (13051) to 13050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.401), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS1255.1 TADA1 gene_id:117143|Hs108|chr1         ( 335) 2255 436.8 1.2e-122


>>CCDS1255.1 TADA1 gene_id:117143|Hs108|chr1              (335 aa)
 initn: 2255 init1: 2255 opt: 2255  Z-score: 2315.6  bits: 436.8 E(32554): 1.2e-122
Smith-Waterman score: 2255; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KE1 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN
              250       260       270       280       290       300

              310       320       330     
pF1KE1 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC
       :::::::::::::::::::::::::::::::::::
CCDS12 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC
              310       320       330     




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:49:42 2016 done: Sun Nov  6 18:49:43 2016
 Total Scan time:  2.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]