FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6550, 122 aa 1>>>pF1KE6550 122 - 122 aa - 122 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4602+/-0.000307; mu= 14.8679+/- 0.019 mean_var=55.2659+/-11.394, 0's: 0 Z-trim(117.2): 17 B-trim: 750 in 1/53 Lambda= 0.172522 statistics sampled from 28949 (28966) to 28949 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.34), width: 16 Scan time: 3.510 The best scores are: opt bits E(85289) NP_061846 (OMIM: 605951,612937) dolichol-phosphate ( 122) 800 206.3 9.8e-54 XP_016856987 (OMIM: 605951,612937) PREDICTED: doli ( 92) 622 161.9 1.7e-40 NP_714963 (OMIM: 605951,612937) dolichol-phosphate ( 92) 622 161.9 1.7e-40 >>NP_061846 (OMIM: 605951,612937) dolichol-phosphate man (122 aa) initn: 800 init1: 800 opt: 800 Z-score: 1085.7 bits: 206.3 E(85289): 9.8e-54 Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122) 10 20 30 40 50 60 pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 70 80 90 100 110 120 pF1KE6 RF :: NP_061 RF >>XP_016856987 (OMIM: 605951,612937) PREDICTED: dolichol (92 aa) initn: 622 init1: 622 opt: 622 Z-score: 848.0 bits: 161.9 E(85289): 1.7e-40 Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 92 aa overlap (31-122:1-92) 10 20 30 40 50 60 pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL :::::::::::::::::::::::::::::: XP_016 MTKLAQWLWGLAILGSTWVALTTGALGLEL 10 20 30 70 80 90 100 110 120 pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 40 50 60 70 80 90 pF1KE6 RF :: XP_016 RF >>NP_714963 (OMIM: 605951,612937) dolichol-phosphate man (92 aa) initn: 622 init1: 622 opt: 622 Z-score: 848.0 bits: 161.9 E(85289): 1.7e-40 Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 92 aa overlap (31-122:1-92) 10 20 30 40 50 60 pF1KE6 MLSVGGLRLSLVRFSFLLLRGALLPSLAVTMTKLAQWLWGLAILGSTWVALTTGALGLEL :::::::::::::::::::::::::::::: NP_714 MTKLAQWLWGLAILGSTWVALTTGALGLEL 10 20 30 70 80 90 100 110 120 pF1KE6 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_714 PLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 40 50 60 70 80 90 pF1KE6 RF :: NP_714 RF 122 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:19:55 2016 done: Tue Nov 8 14:19:55 2016 Total Scan time: 3.510 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]