Result of FASTA (ccds) for
pFN21AE6188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6188, 167 aa
1>>>pF1KE6188 167 - 167 aa - 167 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1455+/-0.000842; mu= 12.4428+/- 0.050
mean_var=56.8541+/-11.520, 0's: 0 Z-trim(105.9): 12 B-trim: 35 in 1/44
Lambda= 0.170096
statistics sampled from 8653 (8658) to 8653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.266), width: 16
Scan time: 1.140
The best scores are: opt bits E(32554)
CCDS44238.1 SLC50A1 gene_id:55974|Hs108|chr1 ( 167) 1131 285.5 1e-77
CCDS1093.1 SLC50A1 gene_id:55974|Hs108|chr1 ( 221) 624 161.2 3.6e-40
CCDS72929.1 SLC50A1 gene_id:55974|Hs108|chr1 ( 156) 514 134.1 3.6e-32
CCDS44239.1 SLC50A1 gene_id:55974|Hs108|chr1 ( 166) 514 134.1 3.8e-32
CCDS72930.1 SLC50A1 gene_id:55974|Hs108|chr1 ( 175) 514 134.1 4e-32
>>CCDS44238.1 SLC50A1 gene_id:55974|Hs108|chr1 (167 aa)
initn: 1131 init1: 1131 opt: 1131 Z-score: 1508.9 bits: 285.5 E(32554): 1e-77
Smith-Waterman score: 1131; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSAS
70 80 90 100 110 120
130 140 150 160
pF1KE6 WCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
130 140 150 160
>>CCDS1093.1 SLC50A1 gene_id:55974|Hs108|chr1 (221 aa)
initn: 635 init1: 620 opt: 624 Z-score: 834.6 bits: 161.2 E(32554): 3.6e-40
Smith-Waterman score: 839; 72.9% identity (72.9% similar) in 199 aa overlap (1-145:1-199)
10 20 30 40 50 60
pF1KE6 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
10 20 30 40 50 60
70 80 90
pF1KE6 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRK--------------------------
::::::::::::::::::::::::::::::::::
CCDS10 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP
70 80 90 100 110 120
100 110 120
pF1KE6 ----------------------------AKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
::::::::::::::::::::::::::::::::
CCDS10 NPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
130 140 150 160 170 180
130 140 150 160
pF1KE6 RLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::
CCDS10 RLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
190 200 210 220
>>CCDS72929.1 SLC50A1 gene_id:55974|Hs108|chr1 (156 aa)
initn: 513 init1: 513 opt: 514 Z-score: 691.0 bits: 134.1 E(32554): 3.6e-32
Smith-Waterman score: 514; 82.8% identity (87.1% similar) in 93 aa overlap (75-167:64-156)
50 60 70 80 90 100
pF1KE6 LPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQ
.: ... : :: ::::::::::
CCDS72 LQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQ
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE6 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
100 110 120 130 140 150
pF1KE6 LQT
:::
CCDS72 LQT
>>CCDS44239.1 SLC50A1 gene_id:55974|Hs108|chr1 (166 aa)
initn: 513 init1: 513 opt: 514 Z-score: 690.6 bits: 134.1 E(32554): 3.8e-32
Smith-Waterman score: 514; 82.8% identity (87.1% similar) in 93 aa overlap (75-167:74-166)
50 60 70 80 90 100
pF1KE6 LPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQ
.: ... : :: ::::::::::
CCDS44 LQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQ
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE6 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
110 120 130 140 150 160
pF1KE6 LQT
:::
CCDS44 LQT
>>CCDS72930.1 SLC50A1 gene_id:55974|Hs108|chr1 (175 aa)
initn: 513 init1: 513 opt: 514 Z-score: 690.3 bits: 134.1 E(32554): 4e-32
Smith-Waterman score: 666; 67.9% identity (67.9% similar) in 168 aa overlap (54-167:8-175)
30 40 50 60 70 80
pF1KE6 SAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLY
::::::::::::::::::::::::::::::
CCDS72 MRGLHPCNLGWLSYGALKGDGILIVVNTVGAALQTLY
10 20 30
90
pF1KE6 ILAYLHYCPRK-------------------------------------------------
:::::::::::
CCDS72 ILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLS
40 50 60 70 80 90
100 110 120 130 140
pF1KE6 -----AKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFW
100 110 120 130 140 150
150 160
pF1KE6 LFWKYPQEQDRNYWLLQT
::::::::::::::::::
CCDS72 LFWKYPQEQDRNYWLLQT
160 170
167 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:11:24 2016 done: Tue Nov 8 10:11:24 2016
Total Scan time: 1.140 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]