FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1622, 136 aa
  1>>>pF1KE1622 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3191+/-0.00026; mu= 12.3332+/- 0.016
 mean_var=80.4185+/-15.730, 0's: 0 Z-trim(121.0): 4  B-trim: 44 in 2/54
 Lambda= 0.143020
 statistics sampled from 37010 (37014) to 37010 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.434), width:  16
 Scan time:  5.240

The best scores are:                                      opt bits E(85289)
NP_036569 (OMIM: 607007) SNARE-associated protein  ( 136)  875 188.8 2.3e-48


>>NP_036569 (OMIM: 607007) SNARE-associated protein Snap  (136 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 989.3  bits: 188.8 E(85289): 2.3e-48
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE1 MAGAGSAAVSGAGTPVAGPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAGAGSAAVSGAGTPVAGPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARR
               70        80        90       100       110       120

              130      
pF1KE1 RAMLDSGIYPPGSPGK
       ::::::::::::::::
NP_036 RAMLDSGIYPPGSPGK
              130      




136 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:54:05 2016 done: Sun Nov  6 18:54:05 2016
 Total Scan time:  5.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]