Restriction map for
pFN21AE6506
(Circular) (Six-base) MAPSORT of: pFN21AE6506.seq Check: 7414 from: 1 to: 5017
pFN21AE6506 5017 bp
With 182 enzymes: SgfI *
January 27, 2015 16:55 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2827 278
Size: 53 83 186 936 1291 2468
Fragments arranged by size:
2468 1291 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2360 1937
Size: 423 4594
Acc65I G'GTAC_C
Cuts at: 2338 2338
Size: 5017
AclI AA'CG_TT
Cuts at: 1563 3144 3517 1563
Size: 1581 373 3063
Fragments arranged by size:
3063 1581 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3080 4464 4732 1632
Size: 1448 1384 268 1917
Fragments arranged by size:
1917 1448 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4820
AflIII A'CryG_T
Cuts at: 1203 3916 4893 1203
Size: 2713 977 1327
Fragments arranged by size:
2713 1327 977
AgeI A'CCGG_T
Cuts at: 3848 3848
Size: 5017
AhdI GACnn_n'nnGTC
Cuts at: 3746 3746
Size: 5017
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5017
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5017
AlwNI CAG_nnn'CTG
Cuts at: 2164 2760 4332 2164
Size: 596 1572 2849
Fragments arranged by size:
2849 1572 596
ApaLI G'TGCA_C
Cuts at: 3074 4230 3074
Size: 1156 3861
ApoI r'AATT_y
Cuts at: 1493 2045 2326 2552 2704 4813 1493
Size: 552 281 226 152 2109 1697
Fragments arranged by size:
2109 1697 552 281 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3571 160
Size: 872 2539 1606
Fragments arranged by size:
2539 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5017
AvaI C'yCGr_G
Cuts at: 1870 1943 2342 1870
Size: 73 399 4545
Fragments arranged by size:
4545 399 73
BamHI G'GATC_C
Cuts at: 2347 2714 2347
Size: 367 4650
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2338 3793 618
Size: 325 217 627 551 1455 1842
Fragments arranged by size:
1842 1455 627 551 325 217
BanII G_rGCy'C
Cuts at: 1391 2336 1391
Size: 945 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4046
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3208 3242 1903
Size: 34 1271 34 3678
Fragments arranged by size:
3678 1271 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2909 4119 2909
Size: 1210 3807
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5017
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3628 136
Size: 107 122 71 631 605 1956 1525
Fragments arranged by size:
1956 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5012 5012
Size: 5017
BlpI GC'TnA_GC
Cuts at: 2434 2434
Size: 5017
Bme1580I G_kGCm'C
Cuts at: 1790 2316 3078 4234 1790
Size: 526 762 1156 2573
Fragments arranged by size:
2573 1156 762 526
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5017
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2748 3706 442
Size: 416 53 83 399 24 1331 958 1753
Fragments arranged by size:
1753 1331 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5017
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2261 2315 3677 1239
Size: 1022 54 1362 2579
Fragments arranged by size:
2579 1362 1022 54
Bpu10I CC'TnA_GC
Cuts at: 2040 2040
Size: 5017
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3142 4007 4305 3142
Size: 865 298 3854
Fragments arranged by size:
3854 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2066 3680 882
Size: 617 567 1614 2219
Fragments arranged by size:
2219 1614 617 567
BsaAI yAC'GTr
Cuts at: 493 1204 2808 493
Size: 711 1604 2702
Fragments arranged by size:
2702 1604 711
BsaBI GATnn'nnATC
Cuts at: 5011 5011
Size: 5017
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2824 3206 3841 275
Size: 53 83 186 936 1291 382 635 1451
Fragments arranged by size:
1451 1291 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3450 3848 4122 4269 4680 3450
Size: 398 274 147 411 3787
Fragments arranged by size:
3787 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2084 2114 1178
Size: 30 165 30 681 30 4081
Fragments arranged by size:
4081 681 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5017
BseYI C'CCAG_C
Cuts at: 2157 4220 4716 2157
Size: 2063 496 2458
Fragments arranged by size:
2458 2063 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4444
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2467 3228 4256 1540
Size: 275 186 466 761 1028 2301
Fragments arranged by size:
2301 1028 761 466 275 186
BsiHKAI G_wGCw'C
Cuts at: 3078 3163 4234 3078
Size: 85 1071 3861
Fragments arranged by size:
3861 1071 85
BsmI GAATG_Cn'
Cuts at: 2528 2621 2528
Size: 93 4924
BsmBI CGTCTCn'nnnn_
Cuts at: 2114 2114
Size: 5017
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2316 2336 3078 3163 4234 1391
Size: 399 526 20 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 526 399 85 20
BspEI T'CCGG_A
Cuts at: 4680 4680
Size: 5017
BspHI T'CATG_A
Cuts at: 2906 4636 2906
Size: 1730 3287
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2372 844
Size: 1528 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2904 1394
Size: 429 1081 3507
Fragments arranged by size:
3507 1081 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2233 3512 3686 65
Size: 1183 985 1279 174 1396
Fragments arranged by size:
1396 1279 1183 985 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3661 3848 1700
Size: 110 1851 187 2869
Fragments arranged by size:
2869 1851 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5017
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5017
BssSI C'ACGA_G
Cuts at: 3077 4089 3077
Size: 1012 4005
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2036 794
Size: 1242 3775
BstBI TT'CG_AA
Cuts at: 3821 3821
Size: 5017
BstEII G'GTnAC_C
Cuts at: 1184 2152 1184
Size: 968 4049
BstYI r'GATC_y
Cuts at: 1972 2347 2714 3099 3116 4568 4654 4666 5012
Size: 375 367 385 17 1452 86 12 346
Cuts at: 5012 1972
Size: 1977
Fragments arranged by size:
1977 1452 385 375 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2103 513
Size: 552 939 99 3427
Fragments arranged by size:
3427 939 552 99
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4278
Fragments arranged by size:
4278 683 56
BtsI GCAGTG_nn'
Cuts at: 2533 3327 3347 2533
Size: 794 20 4203
Fragments arranged by size:
4203 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5017
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 4982
DraI TTT'AAA
Cuts at: 2321 2321
Size: 5017
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4024 809
Size: 507 2708 1802
Fragments arranged by size:
2708 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2277 2464 3353
Size: 54 1425 50 275 18 447 187 889
Cuts at: 3353 4982 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 447 275 187 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2464 1537
Size: 275 652 4090
Fragments arranged by size:
4090 652 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2193 2947 1353
Size: 840 754 3423
Fragments arranged by size:
3423 840 754
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3604 3978 4124 387
Size: 1064 138 2015 374 146 1280
Fragments arranged by size:
2015 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2261 2315 3080 3677 4464 4732 1239
Size: 393 629 54 765 597 787 268 1524
Fragments arranged by size:
1524 787 765 629 597 393 268 54
EcoO109I rG'GnC_Cy
Cuts at: 2146 2146
Size: 5017
EcoRI G'AATT_C
Cuts at: 2045 2326 2704 2045
Size: 281 378 4358
Fragments arranged by size:
4358 378 281
FspI TGC'GCA
Cuts at: 3523 3523
Size: 5017
HaeII r_GCGC'y
Cuts at: 1678 4164 1678
Size: 2486 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3658 3690 3732 3764 1373
Size: 32 135 32 2086 32 42 32 2626
Fragments arranged by size:
2626 2086 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2361 2607 669
Size: 988 281 423 246 3079
Fragments arranged by size:
3079 988 423 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5017
HpaI GTT'AAC
Cuts at: 2607 2607
Size: 5017
KpnI G_GTAC'C
Cuts at: 2342 2342
Size: 5017
MfeI C'AATT_G
Cuts at: 2616 2616
Size: 5017
MluI A'CGCG_T
Cuts at: 4893 4893
Size: 5017
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4131 4315 1305
Size: 2826 184 2007
Fragments arranged by size:
2826 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3195
Fragments arranged by size:
3195 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2975 3334 3493 518
Size: 648 1809 359 159 2042
Fragments arranged by size:
2042 1809 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2164 2223 2433 3110 4258 4503 1606
Size: 558 59 210 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 558 245 210 59
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3526
Fragments arranged by size:
3526 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5017
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5017
NotI GC'GGCC_GC
Cuts at: 2464 2464
Size: 5017
NspI r_CATG'y
Cuts at: 1132 1229 2375 3920 1132
Size: 97 1146 1545 2229
Fragments arranged by size:
2229 1545 1146 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5017
PciI A'CATG_T
Cuts at: 3916 3916
Size: 5017
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5017
PmeI GTTT'AAAC
Cuts at: 2321 2321
Size: 5017
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3086 3118 4599 4631 3086
Size: 32 1481 32 3472
Fragments arranged by size:
3472 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2146 2146
Size: 5017
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5017
PsiI TTA'TAA
Cuts at: 2587 2587
Size: 5017
PstI C_TGCA'G
Cuts at: 830 2369 830
Size: 1539 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5017
PvuII CAG'CTG
Cuts at: 2164 2223 2164
Size: 59 4958
SalI G'TCGA_C
Cuts at: 1936 2359 1936
Size: 423 4594
SbfI CC_TGCA'GG
Cuts at: 2369 2369
Size: 5017
ScaI AGT'ACT
Cuts at: 2099 3265 4977 2099
Size: 1166 1712 2139
Fragments arranged by size:
2139 1712 1166
SexAI A'CCwGG_T
Cuts at: 2148 2148
Size: 5017
SfcI C'TryA_G
Cuts at: 826 1045 2365 3500 4181 4372 826
Size: 219 1320 1135 681 191 1471
Fragments arranged by size:
1471 1320 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5017
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5017
SmaI CCC'GGG
Cuts at: 1872 2344 1872
Size: 472 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3121 4022 4284 820
Size: 197 926 1178 901 262 1553
Fragments arranged by size:
1553 1178 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2808 493
Size: 2315 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5017
SphI G_CATG'C
Cuts at: 1132 2375 1132
Size: 1243 3774
SspI AAT'ATT
Cuts at: 5 52 2941 5
Size: 47 2889 2081
Fragments arranged by size:
2889 2081 47
StuI AGG'CCT
Cuts at: 1517 2302 1517
Size: 785 4232
StyI C'CwwG_G
Cuts at: 513 1065 2004 2456 513
Size: 552 939 452 3074
Fragments arranged by size:
3074 939 552 452
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2007 2171 3044 3061 3214 3399 3844
Size: 1255 427 164 873 17 153 185 445
Cuts at: 3844 325
Size: 1498
Fragments arranged by size:
1498 1255 873 445 427 185 164 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2097 3263 4975
Size: 274 80 33 51 1443 120 1166 1712
Cuts at: 4975 96
Size: 138
Fragments arranged by size:
1712 1443 1166 274 138 120 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2084 2116 4977 5009 2084
Size: 32 2861 32 2092
Fragments arranged by size:
2861 2092 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 2013 2150 1316
Size: 697 137 4183
Fragments arranged by size:
4183 697 137
XbaI T'CTAG_A
Cuts at: 2353 2353
Size: 5017
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5017
XmaI C'CCGG_G
Cuts at: 1870 2342 1870
Size: 472 4545
XmnI GAAnn'nnTTC
Cuts at: 3146 3146
Size: 5017
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2825 276
Size: 53 83 186 936 1291 2468
Fragments arranged by size:
2468 1291 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII
SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI
PspXI PsrI RsrII SacI SacII SanDI SapI SfiI
SfoI SrfI SwaI XcmI