FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6523, 94 aa 1>>>pF1KE6523 94 - 94 aa - 94 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7459+/-0.000231; mu= 1.3986+/- 0.015 mean_var=179.9128+/-35.672, 0's: 0 Z-trim(128.7): 23 B-trim: 56 in 1/56 Lambda= 0.095619 statistics sampled from 60000 (61239) to 61582 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.927), E-opt: 0.2 (0.722), width: 16 Scan time: 4.520 The best scores are: opt bits E(85289) NP_848521 (OMIM: 612615) late cornified envelope p ( 94) 760 114.2 3.1e-26 NP_115952 (OMIM: 612616) late cornified envelope p ( 92) 620 94.9 2e-20 XP_011507786 (OMIM: 612617) PREDICTED: late cornif ( 92) 606 93.0 7.7e-20 NP_848522 (OMIM: 612617) late cornified envelope p ( 92) 606 93.0 7.7e-20 NP_848520 (OMIM: 612614) late cornified envelope p ( 95) 568 87.7 3e-18 NP_848518 (OMIM: 612613) late cornified envelope p ( 89) 546 84.7 2.3e-17 NP_848133 (OMIM: 612618) late cornified envelope p ( 99) 458 72.6 1.1e-13 NP_848125 (OMIM: 612603) late cornified envelope p ( 110) 405 65.3 2e-11 NP_848515 (OMIM: 612609) late cornified envelope p ( 106) 371 60.6 4.9e-10 NP_848525 (OMIM: 612619) late cornified envelope p ( 118) 360 59.1 1.5e-09 NP_001263260 (OMIM: 612605) late cornified envelop ( 88) 328 54.6 2.6e-08 XP_011507023 (OMIM: 612618) PREDICTED: late cornif ( 175) 326 54.6 5.3e-08 NP_848128 (OMIM: 612605) late cornified envelope p ( 118) 313 52.6 1.4e-07 NP_848516 (OMIM: 612611) late cornified envelope p ( 110) 304 51.4 3.1e-07 NP_848517 (OMIM: 612612) late cornified envelope p ( 110) 303 51.2 3.4e-07 NP_848130 (OMIM: 612607) late cornified envelope p ( 118) 302 51.1 3.9e-07 NP_055172 (OMIM: 612610) late cornified envelope p ( 110) 299 50.7 4.9e-07 NP_848131 (OMIM: 612608) late cornified envelope p ( 118) 297 50.4 6.3e-07 NP_848129 (OMIM: 612606) late cornified envelope p ( 114) 285 48.8 1.9e-06 NP_848126 (OMIM: 612604) late cornified envelope p ( 118) 284 48.6 2.2e-06 >>NP_848521 (OMIM: 612615) late cornified envelope prote (94 aa) initn: 760 init1: 760 opt: 760 Z-score: 591.9 bits: 114.2 E(85289): 3.1e-26 Smith-Waterman score: 760; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_848 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF 10 20 30 40 50 60 70 80 90 pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC :::::::::::::::::::::::::::::::::: NP_848 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC 70 80 90 >>NP_115952 (OMIM: 612616) late cornified envelope prote (92 aa) initn: 469 init1: 407 opt: 620 Z-score: 487.6 bits: 94.9 E(85289): 2e-20 Smith-Waterman score: 620; 84.0% identity (89.4% similar) in 94 aa overlap (1-94:1-92) 10 20 30 40 50 60 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF ::::::::::::::.:::::::::::.::::: :: :: ::::::::::.:: :.::: NP_115 MSCQQNQQQCQPPPKCPSPKCPPKSPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR-- 10 20 30 40 50 70 80 90 pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC : :.::::: :::::::::::::: :::::::: NP_115 RHHRCRRQRPNSCDRGSGQQGGGSGCGHGSGGCC 60 70 80 90 >>XP_011507786 (OMIM: 612617) PREDICTED: late cornified (92 aa) initn: 440 init1: 398 opt: 606 Z-score: 477.2 bits: 93.0 E(85289): 7.7e-20 Smith-Waterman score: 606; 81.9% identity (89.4% similar) in 94 aa overlap (1-94:1-92) 10 20 30 40 50 60 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF :::::::.::::::.:::::::::.:.::::: :: :: ::::::::::.:: :.::: XP_011 MSCQQNQKQCQPPPKCPSPKCPPKNPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR-- 10 20 30 40 50 70 80 90 pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC : :.:::::::::::::::::::: ::::::: XP_011 RHHRCRRQRSNSCDRGSGQQGGGSGCCHGSGGCC 60 70 80 90 >>NP_848522 (OMIM: 612617) late cornified envelope prote (92 aa) initn: 440 init1: 398 opt: 606 Z-score: 477.2 bits: 93.0 E(85289): 7.7e-20 Smith-Waterman score: 606; 81.9% identity (89.4% similar) in 94 aa overlap (1-94:1-92) 10 20 30 40 50 60 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF :::::::.::::::.:::::::::.:.::::: :: :: ::::::::::.:: :.::: NP_848 MSCQQNQKQCQPPPKCPSPKCPPKNPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR-- 10 20 30 40 50 70 80 90 pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC : :.:::::::::::::::::::: ::::::: NP_848 RHHRCRRQRSNSCDRGSGQQGGGSGCCHGSGGCC 60 70 80 90 >>NP_848520 (OMIM: 612614) late cornified envelope prote (95 aa) initn: 376 init1: 305 opt: 568 Z-score: 448.7 bits: 87.7 E(85289): 3e-18 Smith-Waterman score: 568; 78.9% identity (84.2% similar) in 95 aa overlap (1-94:1-95) 10 20 30 40 50 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCG-PSSESGCCLSHHRH :::::::::::: :.:::::::::: :::::: :: :: : :: ::::.:::::::: NP_848 MSCQQNQQQCQPLPKCPSPKCPPKSSAQCLPPASSCCAPRPGCCGGPSSEGGCCLSHHRC 10 20 30 40 50 60 60 70 80 90 pF1KE6 FRSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC :::.:::: ::::::::::: :.: :.:::::: NP_848 CRSHRCRRQSSNSCDRGSGQQDGASDCGYGSGGCC 70 80 90 >>NP_848518 (OMIM: 612613) late cornified envelope prote (89 aa) initn: 468 init1: 468 opt: 546 Z-score: 432.6 bits: 84.7 E(85289): 2.3e-17 Smith-Waterman score: 546; 77.7% identity (84.0% similar) in 94 aa overlap (1-94:1-89) 10 20 30 40 50 60 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF :::::::::::::: ::: ::::::::: ::.:: :::::::::: .::::::: NP_848 MSCQQNQQQCQPPP-----KCPAKSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCR 10 20 30 40 50 70 80 90 pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC :::.:: : :::::::::::::.: ::.:.::: NP_848 RSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC 60 70 80 >>NP_848133 (OMIM: 612618) late cornified envelope prote (99 aa) initn: 592 init1: 201 opt: 458 Z-score: 366.4 bits: 72.6 E(85289): 1.1e-13 Smith-Waterman score: 458; 66.0% identity (75.7% similar) in 103 aa overlap (1-94:1-99) 10 20 30 40 50 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCL---PPP-SSDCALSSGGCGP-SSESG-CCL ::::::::::::::.:: :: ::: :..: ::: :: :. :::::: :::.: ::: NP_848 MSCQQNQQQCQPPPKCPIPKYPPKCPSKCASSCPPPISSCCGSSSGGCGCCSSEGGGCCL 10 20 30 40 50 60 60 70 80 90 pF1KE6 SHHRHFRSHQCRRQRSNSC-DRGSGQQGGGS--CRGHGSGGCC ::::: ::: :.: .:..: :::::.::: : : :::: NP_848 SHHRHHRSH-CHRPKSSNCYGSGSGQQSGGSGCCSG---GGCC 70 80 90 >>NP_848125 (OMIM: 612603) late cornified envelope prote (110 aa) initn: 368 init1: 182 opt: 405 Z-score: 326.3 bits: 65.3 E(85289): 2e-11 Smith-Waterman score: 405; 53.5% identity (65.8% similar) in 114 aa overlap (1-94:1-110) 10 20 30 40 50 pF1KE6 MSCQQNQQQCQPPPSC--------PSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESG- :::::.::::::::.: :.:::::: : .: :: :: :..::::: :: .: NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKC-PPVSSCCSVSSGGCCGSSSGGG 10 20 30 40 50 60 70 80 90 pF1KE6 -------CCLSHHRHFRSHQCRRQRSNSCDRGSGQQGGGSC----RGHGSGGCC :::::::. :::. : : :. :.. :: :.:: :. ::::: NP_848 CSSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSG---GSSCCGGDSGQHSGGCC 60 70 80 90 100 110 >>NP_848515 (OMIM: 612609) late cornified envelope prote (106 aa) initn: 464 init1: 177 opt: 371 Z-score: 301.2 bits: 60.6 E(85289): 4.9e-10 Smith-Waterman score: 375; 51.4% identity (63.1% similar) in 111 aa overlap (1-94:1-106) 10 20 30 40 pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQC-------LPPPSSDC---------ALSSGGC ::::::::::::::.:: :::::: : .: ::: :.: . ::::: NP_848 MSCQQNQQQCQPPPKCP-PKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGC 10 20 30 40 50 50 60 70 80 90 pF1KE6 GPSSESGCCLSHHRHFRSHQCRRQRSNSCD-RGSGQQGGGSCRGHGSGGCC :. .:::::::: :. :.: . :. . :: :.: : :.:: :: NP_848 CSSGGGGCCLSHHRPRLFHRHRHQSPDCCECEPSG--GSGCC--HSSGDCC 60 70 80 90 100 >>NP_848525 (OMIM: 612619) late cornified envelope prote (118 aa) initn: 396 init1: 302 opt: 360 Z-score: 292.3 bits: 59.1 E(85289): 1.5e-09 Smith-Waterman score: 415; 55.9% identity (67.6% similar) in 111 aa overlap (1-94:1-111) 10 20 30 40 pF1KE6 MSCQQNQQQCQPPPSC-PS----------PKCPPKSPAQC---LPPP-SSDCALSSGGCG :::::.::::::::.: :. :::::: : :: ::: :: :. ::::: NP_848 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 PSSESGCCLSHHRHFRSHQCRRQRSNSCDRGSGQQGGGS--CRGHGSGGCC : .:::::::: .: . : : :. : :::::.::: :.. :..::: NP_848 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC 70 80 90 100 110 94 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:04:53 2016 done: Tue Nov 8 14:04:54 2016 Total Scan time: 4.520 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]