FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3679, 304 aa 1>>>pF1KE3679 304 - 304 aa - 304 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9589+/-0.00071; mu= 13.7298+/- 0.043 mean_var=109.9592+/-23.453, 0's: 0 Z-trim(113.1): 92 B-trim: 539 in 1/49 Lambda= 0.122309 statistics sampled from 13710 (13814) to 13710 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.424), width: 16 Scan time: 2.460 The best scores are: opt bits E(32554) CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1 ( 304) 2156 390.6 8.1e-109 CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19 ( 311) 720 137.2 1.6e-32 >>CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1 (304 aa) initn: 2156 init1: 2156 opt: 2156 Z-score: 2067.1 bits: 390.6 E(32554): 8.1e-109 Smith-Waterman score: 2156; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304) 10 20 30 40 50 60 pF1KE3 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 SRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 LPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSNDSQLHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 VRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSNDSQLHD 250 260 270 280 290 300 pF1KE3 RWTF :::: CCDS72 RWTF >>CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19 (311 aa) initn: 832 init1: 605 opt: 720 Z-score: 697.6 bits: 137.2 E(32554): 1.6e-32 Smith-Waterman score: 875; 47.1% identity (69.0% similar) in 306 aa overlap (19-296:10-306) 10 20 30 40 50 60 pF1KE3 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG :.::: :. :. :.::.:::::::::::::. ... .:. CCDS12 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGS 10 20 30 40 50 70 80 90 100 pF1KE3 SRIDNTTTTHFAELWGHLDHTMF-------------FQD-FR-PFLSSSPLDQDNRA--- . : : :.:. .: :.: :. : . . .:.: CCDS12 APSTAPTDQSRPPLE-HVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPES 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 -NERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGS :: : .. . ::: :: : : :...: . :..:::.:.. :... ..:: : CCDS12 RRERDHPSRHRY-GARQPRARLTTR---RATGRHEGVPTLEGIIQQLVNGIITPATIP-S 120 130 140 150 160 170 180 190 200 210 220 pF1KE3 PHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQ : : :.::::: ::::: .:::::.::::.:.::::::::::::: .:::: ::.:. CCDS12 LGP--W-GVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 VDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQ- : ::::::::.::.. :.::::::::.::..::::::: ::.::::::::.:.... . CCDS12 VGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP 230 240 250 260 270 280 290 300 pF1KE3 --------SQSTEASASNRFSNDSQLHDRWTF :.:. .:.:. ::.. CCDS12 PGLTGVSFSSSSSSSSSSSPSNENATSNS 290 300 310 304 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:57:09 2016 done: Sun Nov 6 18:57:09 2016 Total Scan time: 2.460 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]