FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6656, 259 aa 1>>>pF1KE6656 259 - 259 aa - 259 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0866+/-0.000306; mu= 12.3992+/- 0.019 mean_var=106.3756+/-21.062, 0's: 0 Z-trim(119.4): 16 B-trim: 0 in 0/55 Lambda= 0.124352 statistics sampled from 33370 (33386) to 33370 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.391), width: 16 Scan time: 5.770 The best scores are: opt bits E(85289) NP_003837 (OMIM: 603867,614920) peroxisomal membra ( 259) 1741 322.3 5.6e-88 NP_001171724 (OMIM: 603867,614920) peroxisomal mem ( 245) 1614 299.5 3.9e-81 NP_003838 (OMIM: 603866) peroxisomal membrane prot ( 247) 466 93.5 3.9e-19 NP_001258502 (OMIM: 603866) peroxisomal membrane p ( 102) 266 57.3 1.3e-08 NP_001258501 (OMIM: 603866) peroxisomal membrane p ( 216) 266 57.6 2.2e-08 NP_001257468 (OMIM: 607583) peroxisomal membrane p ( 180) 163 39.0 0.007 XP_011526729 (OMIM: 607583) PREDICTED: peroxisomal ( 198) 162 38.9 0.0085 NP_542393 (OMIM: 607583) peroxisomal membrane prot ( 241) 163 39.1 0.0088 >>NP_003837 (OMIM: 603867,614920) peroxisomal membrane p (259 aa) initn: 1741 init1: 1741 opt: 1741 Z-score: 1700.5 bits: 322.3 E(85289): 5.6e-88 Smith-Waterman score: 1741; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_003 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 190 200 210 220 230 240 250 pF1KE6 VSSILSILTLIYPWLRLKP ::::::::::::::::::: NP_003 VSSILSILTLIYPWLRLKP 250 >>NP_001171724 (OMIM: 603867,614920) peroxisomal membran (245 aa) initn: 1614 init1: 1614 opt: 1614 Z-score: 1577.7 bits: 299.5 E(85289): 3.9e-81 Smith-Waterman score: 1614; 99.6% identity (100.0% similar) in 241 aa overlap (19-259:5-245) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::::::::::::::::::::::::::::::::::::::::: NP_001 MGKLRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 10 20 30 40 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_001 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 170 180 190 200 210 220 250 pF1KE6 VSSILSILTLIYPWLRLKP ::::::::::::::::::: NP_001 VSSILSILTLIYPWLRLKP 230 240 >>NP_003838 (OMIM: 603866) peroxisomal membrane protein (247 aa) initn: 715 init1: 463 opt: 466 Z-score: 464.6 bits: 93.5 E(85289): 3.9e-19 Smith-Waterman score: 677; 40.7% identity (73.3% similar) in 258 aa overlap (1-258:1-245) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::..::. :.:.:.:: ::.::.: :: . :. .... .. ....::: .: ::: .: NP_003 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA ::: . :........: .:.: :.:.:...:::..::.::..::. . ::. ...::: NP_003 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :. ..: .::...: :: ::: : :.. . :.: : : .. : . NP_003 TRAAHHYYYSLLLSLVRDLYEISLQMKRVT--CDRAKK----------EKSASQDPLWFS 130 140 150 160 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL . . :. .::: : :. :::::::.:.: ::.. :::.::... .:::.:: :: NP_003 VAEEETEW-LQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 170 180 190 200 210 220 250 pF1KE6 VSSILSILTLIYPWLRLKP :::: ...:. :: ..:: NP_003 VSSIAGMITVAYPQMKLKTR 230 240 >>NP_001258502 (OMIM: 603866) peroxisomal membrane prote (102 aa) initn: 266 init1: 266 opt: 266 Z-score: 275.9 bits: 57.3 E(85289): 1.3e-08 Smith-Waterman score: 266; 56.9% identity (84.6% similar) in 65 aa overlap (194-258:36-100) 170 180 190 200 210 220 pF1KE6 VPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLD .::: : :. :::::::.:.: ::.. ::: NP_001 CDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLD 10 20 30 40 50 60 230 240 250 pF1KE6 KLGLWRCGPGIVGLCGLVSSILSILTLIYPWLRLKP .::... .:::.:: :::::: ...:. :: ..:: NP_001 QLGIYKSNPGIIGLGGLVSSIAGMITVAYPQMKLKTR 70 80 90 100 >>NP_001258501 (OMIM: 603866) peroxisomal membrane prote (216 aa) initn: 616 init1: 266 opt: 266 Z-score: 271.5 bits: 57.6 E(85289): 2.2e-08 Smith-Waterman score: 520; 36.8% identity (63.2% similar) in 258 aa overlap (1-258:1-214) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::..::. :.:.:.:: ::.::.: :: . :. .... .. ....::: .: ::: NP_001 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRK--- 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA :.:::..::.::..::. . ::. ...::: NP_001 ----------------------------SNLNRVIYFICDTILWVRSVGLTSGINKEKWR 60 70 80 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :. ..: .::...: :: ::: : :.. . :.: : : .. : . NP_001 TRAAHHYYYSLLLSLVRDLYEISLQMKRVT--CDRAKK----------EKSASQDPLWFS 90 100 110 120 130 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL . . :. .::: : :. :::::::.:.: ::.. :::.::... .:::.:: :: NP_001 VAEEETEW-LQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 140 150 160 170 180 190 250 pF1KE6 VSSILSILTLIYPWLRLKP :::: ...:. :: ..:: NP_001 VSSIAGMITVAYPQMKLKTR 200 210 >>NP_001257468 (OMIM: 607583) peroxisomal membrane prote (180 aa) initn: 76 init1: 56 opt: 163 Z-score: 172.7 bits: 39.0 E(85289): 0.007 Smith-Waterman score: 163; 26.2% identity (61.4% similar) in 145 aa overlap (12-151:15-157) 10 20 30 40 50 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHAL-QRHGASPELQKQIRQLESHLSLGR ..:.:: :. : :.:.: .: .. : :. .. . ..:: : NP_001 MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 KLLRLGNSADALESAKR---AVHLSDVVLRFCITV-SHLNRALYFVCDNVLWAGKSGLAP .::: .. . .:. ... :. .: :..: ..: ::. :..: ::. . . NP_001 TILRLFDDLAMFVYTKQYGLGAQEEDAFVR-CVSVLGNLADQLYYPCEHVAWAADARVL- 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVDQEKWAQRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGG .::. .: : . .::.....:. . . : .. : NP_001 HVDSSRWWTLSTTLWALSLLLGVARSLWMLLKLRQRLRSPTAPFTSMYQAARAGGQAEAT 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 LGGPGTPGGGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGP NP_001 TP 180 >>XP_011526729 (OMIM: 607583) PREDICTED: peroxisomal mem (198 aa) initn: 76 init1: 56 opt: 162 Z-score: 171.2 bits: 38.9 E(85289): 0.0085 Smith-Waterman score: 162; 27.5% identity (62.6% similar) in 131 aa overlap (12-137:15-143) 10 20 30 40 50 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHAL-QRHGASPELQKQIRQLESHLSLGR ..:.:: :. : :.:.: .: .. : :. .. . ..:: : XP_011 MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 KLLRLGNSADALESAKR---AVHLSDVVLRFCITV-SHLNRALYFVCDNVLWAGKSGLAP .::: .. . .:. ... :. .: :..: ..: ::. :..: ::. . . XP_011 TILRLFDDLAMFVYTKQYGLGAQEEDAFVR-CVSVLGNLADQLYYPCEHVAWAADARVL- 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVDQEKWAQRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGG .::. .: : . .::.....: XP_011 HVDSSRWWTLSTTLWALSLLLGVARIKWNCFTAIEVLCAPPAAAFLFRACGFSSFLWICS 120 130 140 150 160 170 >>NP_542393 (OMIM: 607583) peroxisomal membrane protein (241 aa) initn: 147 init1: 56 opt: 163 Z-score: 171.0 bits: 39.1 E(85289): 0.0088 Smith-Waterman score: 185; 27.4% identity (56.4% similar) in 241 aa overlap (12-247:15-226) 10 20 30 40 50 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHAL-QRHGASPELQKQIRQLESHLSLGR ..:.:: :. : :.:.: .: .. : :. .. . ..:: : NP_542 MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 KLLRLGNSADALESAKR---AVHLSDVVLRFCITV-SHLNRALYFVCDNVLWAGKSGLAP .::: .. . .:. ... :. .: :..: ..: ::. :..: ::. . . NP_542 TILRLFDDLAMFVYTKQYGLGAQEEDAFVR-CVSVLGNLADQLYYPCEHVAWAADARVL- 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVDQEKWAQRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGG .::. .: : . .::.....:. . . : ..: ::. : :. NP_542 HVDSSRWWTLSTTLWALSLLLGVARSLWML-LKLRQ-------RLR---------SPTAP 120 130 140 150 160 180 190 200 210 220 230 pF1KE6 LGGPGTPGGGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGP . .: : : . :.. ..: :. .: . : :.. :: ..: : : : NP_542 FTSP-LPRG--KRRAMEAQMQSEALS-LLSN----LADLA-NAVH-WLPRGVLWAGRFPP 170 180 190 200 210 240 250 pF1KE6 GIVGLCGLVSSILSILTLIYPWLRLKP .::: : .:::::. NP_542 WLVGLMGTISSILSMYQAARAGGQAEATTP 220 230 240 259 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:10:38 2016 done: Tue Nov 8 15:10:39 2016 Total Scan time: 5.770 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]