FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6656, 259 aa 1>>>pF1KE6656 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1178+/-0.000713; mu= 12.5055+/- 0.043 mean_var=107.2565+/-21.886, 0's: 0 Z-trim(112.8): 12 B-trim: 0 in 0/50 Lambda= 0.123840 statistics sampled from 13499 (13506) to 13499 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.415), width: 16 Scan time: 2.040 The best scores are: opt bits E(32554) CCDS72871.1 PEX11B gene_id:8799|Hs108|chr1 ( 259) 1741 320.9 5.5e-88 CCDS72870.1 PEX11B gene_id:8799|Hs108|chr1 ( 245) 1614 298.2 3.6e-81 CCDS10354.1 PEX11A gene_id:8800|Hs108|chr15 ( 247) 466 93.1 2e-19 >>CCDS72871.1 PEX11B gene_id:8799|Hs108|chr1 (259 aa) initn: 1741 init1: 1741 opt: 1741 Z-score: 1693.0 bits: 320.9 E(32554): 5.5e-88 Smith-Waterman score: 1741; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS72 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 190 200 210 220 230 240 250 pF1KE6 VSSILSILTLIYPWLRLKP ::::::::::::::::::: CCDS72 VSSILSILTLIYPWLRLKP 250 >>CCDS72870.1 PEX11B gene_id:8799|Hs108|chr1 (245 aa) initn: 1614 init1: 1614 opt: 1614 Z-score: 1570.7 bits: 298.2 E(32554): 3.6e-81 Smith-Waterman score: 1614; 99.6% identity (100.0% similar) in 241 aa overlap (19-259:5-245) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::::::::::::::::::::::::::::::::::::::::: CCDS72 MGKLRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 10 20 30 40 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS72 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 170 180 190 200 210 220 250 pF1KE6 VSSILSILTLIYPWLRLKP ::::::::::::::::::: CCDS72 VSSILSILTLIYPWLRLKP 230 240 >>CCDS10354.1 PEX11A gene_id:8800|Hs108|chr15 (247 aa) initn: 715 init1: 463 opt: 466 Z-score: 462.2 bits: 93.1 E(32554): 2e-19 Smith-Waterman score: 677; 40.7% identity (73.3% similar) in 258 aa overlap (1-258:1-245) 10 20 30 40 50 60 pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR :::..::. :.:.:.:: ::.::.: :: . :. .... .. ....::: .: ::: .: CCDS10 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA ::: . :........: .:.: :.:.:...:::..::.::..::. . ::. ...::: CCDS10 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG :. ..: .::...: :: ::: : :.. . :.: : : .. : . CCDS10 TRAAHHYYYSLLLSLVRDLYEISLQMKRVT--CDRAKK----------EKSASQDPLWFS 130 140 150 160 190 200 210 220 230 240 pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL . . :. .::: : :. :::::::.:.: ::.. :::.::... .:::.:: :: CCDS10 VAEEETEW-LQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 170 180 190 200 210 220 250 pF1KE6 VSSILSILTLIYPWLRLKP :::: ...:. :: ..:: CCDS10 VSSIAGMITVAYPQMKLKTR 230 240 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:10:38 2016 done: Tue Nov 8 15:10:38 2016 Total Scan time: 2.040 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]