FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3960, 562 aa 1>>>pF1KE3960 562 - 562 aa - 562 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3554+/-0.000406; mu= 15.8257+/- 0.025 mean_var=152.8220+/-30.703, 0's: 0 Z-trim(116.7): 140 B-trim: 170 in 2/53 Lambda= 0.103748 statistics sampled from 27809 (28006) to 27809 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.328), width: 16 Scan time: 8.220 The best scores are: opt bits E(85289) NP_001139107 (OMIM: 609318) tripartite motif-conta ( 562) 3893 595.0 2.1e-169 NP_079464 (OMIM: 609318) tripartite motif-containi ( 580) 2646 408.4 3.2e-113 XP_011540501 (OMIM: 609318) PREDICTED: tripartite ( 476) 1943 303.1 1.3e-81 NP_003843 (OMIM: 188550,603406) transcription inte (1016) 495 86.7 3.9e-16 NP_056989 (OMIM: 188550,603406) transcription inte (1050) 495 86.7 4e-16 XP_016856943 (OMIM: 188550,605769) PREDICTED: E3 u ( 638) 443 78.7 6.3e-14 NP_148980 (OMIM: 188550,605769) E3 ubiquitin-prote (1110) 443 79.0 9.1e-14 NP_056990 (OMIM: 188550,605769) E3 ubiquitin-prote (1127) 443 79.0 9.2e-14 XP_005270994 (OMIM: 188550,605769) PREDICTED: E3 u (1134) 443 79.0 9.2e-14 XP_011539870 (OMIM: 188550,605769) PREDICTED: E3 u (1150) 443 79.0 9.3e-14 XP_005270993 (OMIM: 188550,605769) PREDICTED: E3 u (1151) 443 79.0 9.3e-14 XP_011518146 (OMIM: 605493) PREDICTED: tripartite ( 744) 363 66.8 2.8e-10 NP_006449 (OMIM: 605493) tripartite motif-containi ( 744) 363 66.8 2.8e-10 NP_150594 (OMIM: 605493) tripartite motif-containi ( 744) 363 66.8 2.8e-10 XP_016872587 (OMIM: 605493) PREDICTED: tripartite ( 744) 363 66.8 2.8e-10 NP_001234935 (OMIM: 605493) tripartite motif-conta ( 744) 363 66.8 2.8e-10 XP_016863436 (OMIM: 614141,615490) PREDICTED: trip ( 761) 341 63.5 2.8e-09 XP_016863435 (OMIM: 614141,615490) PREDICTED: trip ( 762) 341 63.5 2.8e-09 XP_011530096 (OMIM: 614141,615490) PREDICTED: trip ( 765) 341 63.5 2.8e-09 XP_006714222 (OMIM: 614141,615490) PREDICTED: trip ( 766) 341 63.5 2.8e-09 XP_016863432 (OMIM: 614141,615490) PREDICTED: trip ( 770) 341 63.5 2.8e-09 NP_056086 (OMIM: 614141,615490) tripartite motif-c ( 771) 341 63.5 2.8e-09 XP_006714221 (OMIM: 614141,615490) PREDICTED: trip ( 774) 341 63.5 2.8e-09 XP_006714220 (OMIM: 614141,615490) PREDICTED: trip ( 775) 341 63.5 2.8e-09 XP_016863433 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863439 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863440 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863437 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863441 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863434 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 XP_016863438 (OMIM: 614141,615490) PREDICTED: trip ( 744) 339 63.2 3.4e-09 NP_001123539 (OMIM: 614141,615490) tripartite moti ( 744) 339 63.2 3.4e-09 XP_006714223 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 XP_006714225 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 XP_006714224 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 XP_011530097 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 XP_011530098 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 XP_011530100 (OMIM: 614141,615490) PREDICTED: trip ( 748) 339 63.2 3.4e-09 NP_112223 (OMIM: 616996) E3 ubiquitin-protein liga ( 755) 339 63.2 3.4e-09 XP_011514891 (OMIM: 616996) PREDICTED: E3 ubiquiti ( 755) 339 63.2 3.4e-09 NP_005753 (OMIM: 601742) transcription intermediar ( 835) 301 57.6 1.9e-07 XP_016865112 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 529) 297 56.7 2.1e-07 NP_001287688 (OMIM: 609317) E3 ubiquitin-protein l ( 716) 297 56.9 2.6e-07 NP_061170 (OMIM: 609317) E3 ubiquitin-protein liga ( 728) 297 56.9 2.6e-07 XP_016865111 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 733) 297 56.9 2.6e-07 XP_016865110 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 745) 297 56.9 2.6e-07 XP_016885031 (OMIM: 189960,300000,300552) PREDICTE ( 489) 288 55.4 5.1e-07 NP_001180208 (OMIM: 189960,300000,300552) E3 ubiqu ( 489) 288 55.4 5.1e-07 XP_016885029 (OMIM: 189960,300000,300552) PREDICTE ( 552) 288 55.4 5.5e-07 XP_016884728 (OMIM: 300204,300928) PREDICTED: prob ( 685) 289 55.7 5.7e-07 >>NP_001139107 (OMIM: 609318) tripartite motif-containin (562 aa) initn: 3893 init1: 3893 opt: 3893 Z-score: 3162.5 bits: 595.0 E(85289): 2.1e-169 Smith-Waterman score: 3893; 99.5% identity (99.5% similar) in 562 aa overlap (1-562:1-562) 10 20 30 40 50 60 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVTVR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: NP_001 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVMVR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE 490 500 510 520 530 540 550 560 pF1KE3 KSECTWTGGQSAPRSLLRTVAL :::::::::::::::::::::: NP_001 KSECTWTGGQSAPRSLLRTVAL 550 560 >>NP_079464 (OMIM: 609318) tripartite motif-containing p (580 aa) initn: 2675 init1: 2644 opt: 2646 Z-score: 2153.6 bits: 408.4 E(85289): 3.2e-113 Smith-Waterman score: 3847; 96.4% identity (96.4% similar) in 580 aa overlap (1-562:1-580) 10 20 30 40 50 60 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV 310 320 330 340 350 360 370 380 390 400 pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIY------------------DLHRAREKQTASF ::::::::::::::::::::::::::::: ::::::::::::: NP_079 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYGTINTKEVDPAKCVLQGEDLHRAREKQTASF 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE3 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW 430 440 450 460 470 480 470 480 490 500 510 520 pF1KE3 VCIKEQHVQGSPFTVTVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: NP_079 VCIKEQHVQGSPFTVMVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG 490 500 510 520 530 540 530 540 550 560 pF1KE3 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL :::::::::::::::::::::::::::::::::::::::: NP_079 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL 550 560 570 580 >>XP_011540501 (OMIM: 609318) PREDICTED: tripartite moti (476 aa) initn: 1972 init1: 1941 opt: 1943 Z-score: 1585.9 bits: 303.1 E(85289): 1.3e-81 Smith-Waterman score: 3144; 95.8% identity (95.8% similar) in 476 aa overlap (105-562:1-476) 80 90 100 110 120 130 pF1KE3 GSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVNDVMLESLRGEGQGLV :::::::::::::::::::::::::::::: XP_011 MGGVKALTIDHLAVNDVMLESLRGEGQGLV 10 20 30 140 150 160 170 180 190 pF1KE3 CDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLKGYSRIGKPILCPVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLKGYSRIGKPILCPVH 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE3 PAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWELLKDTQPHVEALEE ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: XP_011 PAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWELLKGTQPHVEALEE 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE3 ALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQK 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE3 AQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF 220 230 240 250 260 270 380 390 400 410 pF1KE3 CPQEKAGQCRGYEIY------------------DLHRAREKQTASFTLLCKDAAGEIMGR ::::::::::::::: ::::::::::::::::::::::::::: XP_011 CPQEKAGQCRGYEIYGTINTKEVDPAKCVLQGEDLHRAREKQTASFTLLCKDAAGEIMGR 280 290 300 310 320 330 420 430 440 450 460 470 pF1KE3 GGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFT 340 350 360 370 380 390 480 490 500 510 520 530 pF1KE3 VTVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCG : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VMVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCG 400 410 420 430 440 450 540 550 560 pF1KE3 KFNEKSECTWTGGQSAPRSLLRTVAL :::::::::::::::::::::::::: XP_011 KFNEKSECTWTGGQSAPRSLLRTVAL 460 470 >>NP_003843 (OMIM: 188550,603406) transcription intermed (1016 aa) initn: 410 init1: 297 opt: 495 Z-score: 410.7 bits: 86.7 E(85289): 3.9e-16 Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL : .: . .::.::::::. : :: NP_003 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP 30 40 50 60 70 80 60 70 80 90 100 110 pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA . . .. :...: . :: . .: . .:.:.. ::::. . .. NP_003 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER 90 100 110 120 130 120 130 140 150 160 pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT ::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : : NP_003 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT 140 150 160 170 180 190 170 180 190 200 210 220 pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC :: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.:: NP_003 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY 200 210 220 230 240 250 230 240 250 260 270 pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV .: ...... ... :: . : : :.. .. .:.:. . : :. NP_003 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS .. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..: NP_003 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE ::. .: .::... :::.: ... .. : .:. :.: : NP_003 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP NP_003 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQQPPPRLINFQNHS 430 440 450 460 470 480 >>NP_056989 (OMIM: 188550,603406) transcription intermed (1050 aa) initn: 392 init1: 279 opt: 495 Z-score: 410.5 bits: 86.7 E(85289): 4e-16 Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL : .: . .::.::::::. : :: NP_056 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP 30 40 50 60 70 80 60 70 80 90 100 110 pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA . . .. :...: . :: . .: . .:.:.. ::::. . .. NP_056 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER 90 100 110 120 130 120 130 140 150 160 pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT ::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : : NP_056 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT 140 150 160 170 180 190 170 180 190 200 210 220 pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC :: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.:: NP_056 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY 200 210 220 230 240 250 230 240 250 260 270 pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV .: ...... ... :: . : : :.. .. .:.:. . : :. NP_056 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS .. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..: NP_056 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE ::. .: .::... :::.: ... .. : .:. :.: : NP_056 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP NP_056 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQVMAQRQQVQRRPA 430 440 450 460 470 480 >>XP_016856943 (OMIM: 188550,605769) PREDICTED: E3 ubiqu (638 aa) initn: 454 init1: 334 opt: 443 Z-score: 371.0 bits: 78.7 E(85289): 6.3e-14 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: XP_016 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: XP_016 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : XP_016 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . XP_016 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : XP_016 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: XP_016 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : XP_016 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC XP_016 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>NP_148980 (OMIM: 188550,605769) E3 ubiquitin-protein l (1110 aa) initn: 454 init1: 334 opt: 443 Z-score: 368.2 bits: 79.0 E(85289): 9.1e-14 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: NP_148 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: NP_148 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : NP_148 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . NP_148 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : NP_148 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: NP_148 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : NP_148 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC NP_148 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>NP_056990 (OMIM: 188550,605769) E3 ubiquitin-protein l (1127 aa) initn: 454 init1: 334 opt: 443 Z-score: 368.1 bits: 79.0 E(85289): 9.2e-14 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: NP_056 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: NP_056 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : NP_056 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . NP_056 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : NP_056 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: NP_056 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : NP_056 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC NP_056 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>XP_005270994 (OMIM: 188550,605769) PREDICTED: E3 ubiqu (1134 aa) initn: 454 init1: 334 opt: 443 Z-score: 368.1 bits: 79.0 E(85289): 9.2e-14 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: XP_005 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: XP_005 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : XP_005 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . XP_005 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : XP_005 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: XP_005 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : XP_005 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC XP_005 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>XP_011539870 (OMIM: 188550,605769) PREDICTED: E3 ubiqu (1150 aa) initn: 454 init1: 334 opt: 443 Z-score: 368.0 bits: 79.0 E(85289): 9.3e-14 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: XP_011 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: XP_011 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : XP_011 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . XP_011 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : XP_011 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: XP_011 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : XP_011 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC XP_011 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 562 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:33:56 2016 done: Sun Nov 6 08:33:57 2016 Total Scan time: 8.220 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]