FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3960, 562 aa 1>>>pF1KE3960 562 - 562 aa - 562 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3873+/-0.000958; mu= 15.5658+/- 0.058 mean_var=140.3288+/-28.089, 0's: 0 Z-trim(109.7): 71 B-trim: 2 in 1/53 Lambda= 0.108268 statistics sampled from 10996 (11066) to 10996 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.34), width: 16 Scan time: 3.420 The best scores are: opt bits E(32554) CCDS44200.1 TRIM45 gene_id:80263|Hs108|chr1 ( 562) 3893 620.0 2.4e-177 CCDS893.1 TRIM45 gene_id:80263|Hs108|chr1 ( 580) 2646 425.2 1e-118 CCDS47720.1 TRIM24 gene_id:8805|Hs108|chr7 (1016) 495 89.5 2.1e-17 CCDS5847.1 TRIM24 gene_id:8805|Hs108|chr7 (1050) 495 89.5 2.2e-17 CCDS873.1 TRIM33 gene_id:51592|Hs108|chr1 (1110) 443 81.4 6.3e-15 CCDS872.1 TRIM33 gene_id:51592|Hs108|chr1 (1127) 443 81.4 6.4e-15 CCDS7764.1 TRIM3 gene_id:10612|Hs108|chr11 ( 744) 363 68.7 2.8e-11 >>CCDS44200.1 TRIM45 gene_id:80263|Hs108|chr1 (562 aa) initn: 3893 init1: 3893 opt: 3893 Z-score: 3297.5 bits: 620.0 E(32554): 2.4e-177 Smith-Waterman score: 3893; 99.5% identity (99.5% similar) in 562 aa overlap (1-562:1-562) 10 20 30 40 50 60 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVTVR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS44 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVMVR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE 490 500 510 520 530 540 550 560 pF1KE3 KSECTWTGGQSAPRSLLRTVAL :::::::::::::::::::::: CCDS44 KSECTWTGGQSAPRSLLRTVAL 550 560 >>CCDS893.1 TRIM45 gene_id:80263|Hs108|chr1 (580 aa) initn: 2675 init1: 2644 opt: 2646 Z-score: 2244.6 bits: 425.2 E(32554): 1e-118 Smith-Waterman score: 3847; 96.4% identity (96.4% similar) in 580 aa overlap (1-562:1-580) 10 20 30 40 50 60 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV 310 320 330 340 350 360 370 380 390 400 pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIY------------------DLHRAREKQTASF ::::::::::::::::::::::::::::: ::::::::::::: CCDS89 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYGTINTKEVDPAKCVLQGEDLHRAREKQTASF 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE3 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW 430 440 450 460 470 480 470 480 490 500 510 520 pF1KE3 VCIKEQHVQGSPFTVTVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: CCDS89 VCIKEQHVQGSPFTVMVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG 490 500 510 520 530 540 530 540 550 560 pF1KE3 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL :::::::::::::::::::::::::::::::::::::::: CCDS89 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL 550 560 570 580 >>CCDS47720.1 TRIM24 gene_id:8805|Hs108|chr7 (1016 aa) initn: 410 init1: 297 opt: 495 Z-score: 425.8 bits: 89.5 E(32554): 2.1e-17 Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL : .: . .::.::::::. : :: CCDS47 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP 30 40 50 60 70 80 60 70 80 90 100 110 pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA . . .. :...: . :: . .: . .:.:.. ::::. . .. CCDS47 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER 90 100 110 120 130 120 130 140 150 160 pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT ::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : : CCDS47 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT 140 150 160 170 180 190 170 180 190 200 210 220 pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC :: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.:: CCDS47 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY 200 210 220 230 240 250 230 240 250 260 270 pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV .: ...... ... :: . : : :.. .. .:.:. . : :. CCDS47 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS .. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..: CCDS47 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE ::. .: .::... :::.: ... .. : .:. :.: : CCDS47 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP CCDS47 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQQPPPRLINFQNHS 430 440 450 460 470 480 >>CCDS5847.1 TRIM24 gene_id:8805|Hs108|chr7 (1050 aa) initn: 392 init1: 279 opt: 495 Z-score: 425.6 bits: 89.5 E(32554): 2.2e-17 Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL : .: . .::.::::::. : :: CCDS58 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP 30 40 50 60 70 80 60 70 80 90 100 110 pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA . . .. :...: . :: . .: . .:.:.. ::::. . .. CCDS58 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER 90 100 110 120 130 120 130 140 150 160 pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT ::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : : CCDS58 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT 140 150 160 170 180 190 170 180 190 200 210 220 pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC :: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.:: CCDS58 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY 200 210 220 230 240 250 230 240 250 260 270 pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV .: ...... ... :: . : : :.. .. .:.:. . : :. CCDS58 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS .. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..: CCDS58 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE ::. .: .::... :::.: ... .. : .:. :.: : CCDS58 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP CCDS58 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQVMAQRQQVQRRPA 430 440 450 460 470 480 >>CCDS873.1 TRIM33 gene_id:51592|Hs108|chr1 (1110 aa) initn: 454 init1: 334 opt: 443 Z-score: 381.4 bits: 81.4 E(32554): 6.3e-15 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: CCDS87 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: CCDS87 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : CCDS87 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . CCDS87 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : CCDS87 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: CCDS87 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : CCDS87 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC CCDS87 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>CCDS872.1 TRIM33 gene_id:51592|Hs108|chr1 (1127 aa) initn: 454 init1: 334 opt: 443 Z-score: 381.3 bits: 81.4 E(32554): 6.4e-15 Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461) 10 20 30 40 50 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL : .: ... :.::::::. : :: CCDS87 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 100 110 120 130 140 150 60 70 80 90 100 pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK . : : : :: :.:.: .:.:.. :::: :.:: CCDS87 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------ 160 170 180 190 110 120 130 140 150 160 pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK .:. :.:. : : . :: :.: : : ::. : .::.: : CCDS87 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF 200 210 220 230 240 250 170 180 190 200 210 220 pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD : : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: . CCDS87 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 260 270 280 290 300 310 230 240 250 260 270 280 pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI : ...... .. .:: . . .. : .:.. . ... . : .... : CCDS87 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI 320 330 340 350 360 370 290 300 310 320 330 340 pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI . :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .: CCDS87 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY 380 390 400 410 420 430 350 360 370 380 390 400 pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL .::... .::.. :.. . :..: ::: : CCDS87 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV 440 450 460 470 480 490 410 420 430 440 450 460 pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC CCDS87 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT 500 510 520 530 540 550 >>CCDS7764.1 TRIM3 gene_id:10612|Hs108|chr11 (744 aa) initn: 563 init1: 321 opt: 363 Z-score: 316.1 bits: 68.7 E(32554): 2.8e-11 Smith-Waterman score: 468; 25.3% identity (48.5% similar) in 549 aa overlap (29-555:22-497) 10 20 30 40 50 60 pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS : .:: .. :..:::::: : ::.. : CCDS77 MAKREDSPGPEVQPMDKQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIP-- 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND :: . . :::: :: ::.:: ... ... CCDS77 -------------------------AQS-LTLSCPVCRQTSILPEQGVSALQ-NNFFISS 60 70 80 130 140 150 160 170 180 pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK .: :... .: :: : .: . CCDS77 LM-EAMQQAPDG----------------------------AH------------DPEDPH 90 100 190 200 210 220 230 pF1KE3 GYSRI-GKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVW : . :.:. :: : .. ....:: :. .: .: .:::::: . .:...: .. CCDS77 PLSVVAGRPLSCPNHEGKTMEFYCEACETAMCGECRAGEHREHGTVLLRDVVEQHKAALQ 110 120 130 140 150 160 240 250 260 270 280 290 pF1KE3 ELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQL . :. .. .. : :.: . :.. ::.: . :.. . : .:...... :...: CCDS77 RQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDL 170 180 190 200 210 220 300 310 320 330 340 350 pF1KE3 EDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNK : : . :.. :: : :.: . .. :.:. : :: :.:.... . ::: : CCDS77 ETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAA 230 240 250 260 270 280 360 370 380 390 400 pF1KE3 VQYSTRPGVNDKIRFCPQEKAGQCRG--------------YEIY----DLHRAREKQTAS . :: : .... : : :. .: :..: : :: CCDS77 QAFPERPHENAQLELV-LEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPAS 290 300 310 320 330 340 410 420 430 440 450 460 pF1KE3 FTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTV .:. :: :... :. .... .. : :: : :.:.::: . :: . : . CCDS77 LTVTTKDKDGRLVRTGSAELRAEITGPDGTRLPV--PVVDHKNGTYELVYTARTEGELLL 350 360 370 380 390 400 470 480 490 500 510 520 pF1KE3 WVCIKEQHVQGSPFTV-TVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCG : . : :.:::: : ..: : : : :: . . :... . : CCDS77 SVLLYGQPVRGSPFRVRALRPGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTG 410 420 430 440 450 460 530 540 550 560 pF1KE3 HGHKGHPGHPH--WSCCGKFNEKSECTWTGGQSAPRSLLRTVAL .: .: . . . .. ::.: : : :: : CCDS77 GKRKDNPIEDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFK 470 480 490 500 510 520 CCDS77 FRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKG 530 540 550 560 570 580 562 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:33:55 2016 done: Sun Nov 6 08:33:56 2016 Total Scan time: 3.420 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]