FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5255, 173 aa 1>>>pF1KE5255 173 - 173 aa - 173 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2903+/-0.000663; mu= 12.7287+/- 0.040 mean_var=65.0688+/-12.761, 0's: 0 Z-trim(110.5): 4 B-trim: 0 in 0/50 Lambda= 0.158997 statistics sampled from 11684 (11686) to 11684 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.359), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS824.1 LAMTOR5 gene_id:10542|Hs108|chr1 ( 173) 1164 275.0 1.6e-74 >>CCDS824.1 LAMTOR5 gene_id:10542|Hs108|chr1 (173 aa) initn: 1164 init1: 1164 opt: 1164 Z-score: 1451.4 bits: 275.0 E(32554): 1.6e-74 Smith-Waterman score: 1164; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE5 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS 130 140 150 160 170 173 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:24:24 2016 done: Tue Nov 8 07:24:25 2016 Total Scan time: 1.930 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]