FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4347, 363 aa 1>>>pF1KE4347 363 - 363 aa - 363 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.9503+/-0.000899; mu= -7.1850+/- 0.054 mean_var=332.4747+/-67.738, 0's: 0 Z-trim(116.4): 9 B-trim: 0 in 0/55 Lambda= 0.070339 statistics sampled from 16987 (16994) to 16987 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.522), width: 16 Scan time: 3.660 The best scores are: opt bits E(32554) CCDS30791.1 PSRC1 gene_id:84722|Hs108|chr1 ( 310) 1439 158.9 5.3e-39 CCDS797.1 PSRC1 gene_id:84722|Hs108|chr1 ( 333) 1431 158.1 9.8e-39 >>CCDS30791.1 PSRC1 gene_id:84722|Hs108|chr1 (310 aa) initn: 1439 init1: 1439 opt: 1439 Z-score: 813.7 bits: 158.9 E(32554): 5.3e-39 Smith-Waterman score: 1441; 72.6% identity (80.1% similar) in 332 aa overlap (1-331:1-306) 10 20 30 40 50 60 pF1KE4 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP :::::::::::::::::::::::::::::::::::::::::. .:. CCDS30 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRAC-------------QPNA 190 200 210 220 250 260 270 280 290 pF1KE4 PGPPTPIRSVLAPQPSTS-NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPP : : . : ::.: . . ..:... : .: : . .. CCDS30 THQPECATWQRCPTSGFSVNSKRASKTKHCRTQSAGKWTQGSCFPATKS----SCHGCHS 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE4 GRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP ..: : .: : :: ..:..::.. CCDS30 QQSAAPQES-----GSPRT----YQVKRSGQQARLQ 290 300 310 360 pF1KE4 GPTR >>CCDS797.1 PSRC1 gene_id:84722|Hs108|chr1 (333 aa) initn: 1421 init1: 1390 opt: 1431 Z-score: 808.9 bits: 158.1 E(32554): 9.8e-39 Smith-Waterman score: 2136; 91.7% identity (91.7% similar) in 363 aa overlap (1-363:1-333) 10 20 30 40 50 60 pF1KE4 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP :::::::::::::::::::::::::::::::: CCDS79 FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS---------------------------- 190 200 210 250 260 270 280 290 300 pF1KE4 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 --PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE4 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 280 290 300 310 320 330 pF1KE4 PTR ::: CCDS79 PTR 363 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:09:36 2016 done: Sun Nov 6 02:09:37 2016 Total Scan time: 3.660 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]