FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8821, 384 aa 1>>>pF1KB8821 384 - 384 aa - 384 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8121+/-0.000672; mu= 18.1166+/- 0.041 mean_var=129.9885+/-29.023, 0's: 0 Z-trim(114.9): 34 B-trim: 820 in 1/49 Lambda= 0.112492 statistics sampled from 15407 (15440) to 15407 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.474), width: 16 Scan time: 3.350 The best scores are: opt bits E(32554) CCDS772.1 GPR88 gene_id:54112|Hs108|chr1 ( 384) 2560 426.0 2.8e-119 >>CCDS772.1 GPR88 gene_id:54112|Hs108|chr1 (384 aa) initn: 2560 init1: 2560 opt: 2560 Z-score: 2255.0 bits: 426.0 E(32554): 2.8e-119 Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 384 aa overlap (1-384:1-384) 10 20 30 40 50 60 pF1KB8 MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRLLRGGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRLLRGGLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 GLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 PRPGAAPPRIHYPALLAAAALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGC :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PRPGAAPPRVHYPALLAAAALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 AAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRRLSGLSVLLLCCVFLLATQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 AAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRRLSGLSVLLLCCVFLLATQPL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 VWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAA 310 320 330 340 350 360 370 380 pF1KB8 AVAATAVPAVSQAQLGTRAAGQHW :::::::::::::::::::::::: CCDS77 AVAATAVPAVSQAQLGTRAAGQHW 370 380 384 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:01:28 2016 done: Sun Nov 6 19:01:29 2016 Total Scan time: 3.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]