FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6661, 274 aa 1>>>pF1KE6661 274 - 274 aa - 274 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7043+/-0.000355; mu= 12.9989+/- 0.022 mean_var=70.6406+/-13.914, 0's: 0 Z-trim(113.6): 22 B-trim: 33 in 1/52 Lambda= 0.152597 statistics sampled from 23009 (23018) to 23009 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.27), width: 16 Scan time: 4.680 The best scores are: opt bits E(85289) NP_002052 (OMIM: 601176,608446) glutamate--cystein ( 274) 1802 405.7 4.7e-113 XP_016856545 (OMIM: 601176,608446) PREDICTED: glut ( 275) 1450 328.2 1e-89 NP_001295182 (OMIM: 601176,608446) glutamate--cyst ( 252) 1368 310.2 2.5e-84 XP_011539563 (OMIM: 601176,608446) PREDICTED: glut ( 186) 1205 274.2 1.2e-73 XP_016856546 (OMIM: 601176,608446) PREDICTED: glut ( 253) 1016 232.7 5.4e-61 >>NP_002052 (OMIM: 601176,608446) glutamate--cysteine li (274 aa) initn: 1802 init1: 1802 opt: 1802 Z-score: 2150.7 bits: 405.7 E(85289): 4.7e-113 Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH 190 200 210 220 230 240 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS :::::::::::::::::::::::::::::::::: NP_002 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS 250 260 270 >>XP_016856545 (OMIM: 601176,608446) PREDICTED: glutamat (275 aa) initn: 1466 init1: 1447 opt: 1450 Z-score: 1731.8 bits: 328.2 E(85289): 1e-89 Smith-Waterman score: 1450; 83.8% identity (90.8% similar) in 271 aa overlap (1-271:1-266) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH ::::::::::::::::::::::::::::::::::::::: ..:... : .. ... XP_016 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKE----TGFHHVTQAGLEFLDSS 190 200 210 220 230 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS . : . . :. .:::..:. . XP_016 N-SPTSASQGAGILGMSHCAWTKGYFIQGDKYLEKVAHVI 240 250 260 270 >>NP_001295182 (OMIM: 601176,608446) glutamate--cysteine (252 aa) initn: 1632 init1: 1368 opt: 1368 Z-score: 1634.9 bits: 310.2 E(85289): 2.5e-84 Smith-Waterman score: 1592; 92.0% identity (92.0% similar) in 274 aa overlap (1-274:1-252) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::: NP_001 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEE------------------ 10 20 30 40 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ----EFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH 160 170 180 190 200 210 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS :::::::::::::::::::::::::::::::::: NP_001 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS 220 230 240 250 >>XP_011539563 (OMIM: 601176,608446) PREDICTED: glutamat (186 aa) initn: 1205 init1: 1205 opt: 1205 Z-score: 1443.0 bits: 274.2 E(85289): 1.2e-73 Smith-Waterman score: 1205; 100.0% identity (100.0% similar) in 186 aa overlap (89-274:1-186) 60 70 80 90 100 110 pF1KE6 NPDLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLG :::::::::::::::::::::::::::::: XP_011 MKVSAKLFIVESNSSSSTRSAVDMACSVLG 10 20 30 120 130 140 150 160 170 pF1KE6 VAQLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VAQLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQW 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE6 AQVKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AQVKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQ 100 110 120 130 140 150 240 250 260 270 pF1KE6 AHEWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS :::::::::::::::::::::::::::::::::::: XP_011 AHEWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS 160 170 180 >>XP_016856546 (OMIM: 601176,608446) PREDICTED: glutamat (253 aa) initn: 1296 init1: 1013 opt: 1016 Z-score: 1216.0 bits: 232.7 E(85289): 5.4e-61 Smith-Waterman score: 1240; 75.6% identity (82.7% similar) in 271 aa overlap (1-271:1-244) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::: XP_016 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEE------------------ 10 20 30 40 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ----EFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH ::::::::::::::::::::::::::::::::::::::: ..:... : .. ... XP_016 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKE----TGFHHVTQAGLEFLDSS 160 170 180 190 200 210 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS . : . . :. .:::..:. . XP_016 N-SPTSASQGAGILGMSHCAWTKGYFIQGDKYLEKVAHVI 220 230 240 250 274 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:12:15 2016 done: Tue Nov 8 15:12:16 2016 Total Scan time: 4.680 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]