FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6661, 274 aa 1>>>pF1KE6661 274 - 274 aa - 274 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7724+/-0.000817; mu= 12.5394+/- 0.049 mean_var=67.2756+/-13.266, 0's: 0 Z-trim(106.7): 17 B-trim: 0 in 0/50 Lambda= 0.156367 statistics sampled from 9154 (9161) to 9154 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.281), width: 16 Scan time: 1.640 The best scores are: opt bits E(32554) CCDS746.1 GCLM gene_id:2730|Hs108|chr1 ( 274) 1802 415.2 2.5e-116 CCDS81352.1 GCLM gene_id:2730|Hs108|chr1 ( 252) 1368 317.3 6.8e-87 >>CCDS746.1 GCLM gene_id:2730|Hs108|chr1 (274 aa) initn: 1802 init1: 1802 opt: 1802 Z-score: 2202.1 bits: 415.2 E(32554): 2.5e-116 Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH 190 200 210 220 230 240 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS :::::::::::::::::::::::::::::::::: CCDS74 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS 250 260 270 >>CCDS81352.1 GCLM gene_id:2730|Hs108|chr1 (252 aa) initn: 1632 init1: 1368 opt: 1368 Z-score: 1673.5 bits: 317.3 E(32554): 6.8e-87 Smith-Waterman score: 1592; 92.0% identity (92.0% similar) in 274 aa overlap (1-274:1-252) 10 20 30 40 50 60 pF1KE6 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEELHDCIQKTLNEWSSQINP :::::::::::::::::::::::::::::::::::::::::: CCDS81 MGTDSRAAKALLARARTLHLQTGNLLNWGRLRKKCPSTHSEE------------------ 10 20 30 40 70 80 90 100 110 120 pF1KE6 DLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 ----EFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVA 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 QLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 VKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAH 160 170 180 190 200 210 250 260 270 pF1KE6 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS :::::::::::::::::::::::::::::::::: CCDS81 EWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS 220 230 240 250 274 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:12:14 2016 done: Tue Nov 8 15:12:15 2016 Total Scan time: 1.640 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]