FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9395, 612 aa
  1>>>pF1KE9395 612 - 612 aa - 612 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2310+/-0.000985; mu= 10.2236+/- 0.059
 mean_var=98.5114+/-19.727, 0's: 0 Z-trim(107.0): 20  B-trim: 145 in 2/49
 Lambda= 0.129220
 statistics sampled from 9281 (9292) to 9281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.285), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS740.1 RPAP2 gene_id:79871|Hs108|chr1           ( 612) 3964 749.6 2.7e-216


>>CCDS740.1 RPAP2 gene_id:79871|Hs108|chr1                (612 aa)
 initn: 3964 init1: 3964 opt: 3964  Z-score: 3996.6  bits: 749.6 E(32554): 2.7e-216
Smith-Waterman score: 3964; 100.0% identity (100.0% similar) in 612 aa overlap (1-612:1-612)

               10        20        30        40        50        60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
              550       560       570       580       590       600

              610  
pF1KE9 LTIIFRTSCLPE
       ::::::::::::
CCDS74 LTIIFRTSCLPE
              610  




612 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:38:47 2016 done: Tue Nov  8 02:38:47 2016
 Total Scan time:  2.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]