FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5054, 153 aa 1>>>pF1KE5054 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6391+/-0.000331; mu= 15.6359+/- 0.021 mean_var=57.7766+/-11.607, 0's: 0 Z-trim(114.6): 17 B-trim: 0 in 0/55 Lambda= 0.168732 statistics sampled from 24561 (24571) to 24561 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.288), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) XP_011540180 (OMIM: 608057) PREDICTED: deoxyribonu ( 153) 1073 268.9 2.3e-72 NP_490649 (OMIM: 608057) deoxyribonuclease-2-beta ( 153) 1073 268.9 2.3e-72 NP_067056 (OMIM: 608057) deoxyribonuclease-2-beta ( 361) 1073 269.1 4.6e-72 NP_001366 (OMIM: 126350) deoxyribonuclease-2-alpha ( 360) 368 97.5 2.1e-20 >>XP_011540180 (OMIM: 608057) PREDICTED: deoxyribonuclea (153 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1420.1 bits: 268.9 E(85289): 2.3e-72 Smith-Waterman score: 1073; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 70 80 90 100 110 120 130 140 150 pF1KE5 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK ::::::::::::::::::::::::::::::::: XP_011 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 130 140 150 >>NP_490649 (OMIM: 608057) deoxyribonuclease-2-beta isof (153 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1420.1 bits: 268.9 E(85289): 2.3e-72 Smith-Waterman score: 1073; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_490 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_490 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 70 80 90 100 110 120 130 140 150 pF1KE5 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK ::::::::::::::::::::::::::::::::: NP_490 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 130 140 150 >>NP_067056 (OMIM: 608057) deoxyribonuclease-2-beta isof (361 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1414.8 bits: 269.1 E(85289): 4.6e-72 Smith-Waterman score: 1073; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:209-361) 10 20 30 pF1KE5 MPQLCTRASSSEIPGRLLTTLQSAQGQKFL :::::::::::::::::::::::::::::: NP_067 YEAIDSQLLVCNPNVYSCSIPATFHQELIHMPQLCTRASSSEIPGRLLTTLQSAQGQKFL 180 190 200 210 220 230 40 50 60 70 80 90 pF1KE5 HFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 HFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHSY 240 250 260 270 280 290 100 110 120 130 140 150 pF1KE5 FSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 FSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYE 300 310 320 330 340 350 pF1KE5 SCK ::: NP_067 SCK 360 >>NP_001366 (OMIM: 126350) deoxyribonuclease-2-alpha pre (360 aa) initn: 272 init1: 150 opt: 368 Z-score: 487.3 bits: 97.5 E(85289): 2.1e-20 Smith-Waterman score: 368; 39.6% identity (63.2% similar) in 144 aa overlap (11-152:207-347) 10 20 30 40 pF1KE5 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLD :. : :: : : : ::: ..: : NP_001 TYPWVYNYQLEGIFAQEFPDLENVVKGHHVSQEPWNSSITLTSQAGAVFQSFAKFSKFGD 180 190 200 210 220 230 50 60 70 80 90 pF1KE5 DIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHS--YFSSYQDHA :....:.: : :.: .. :.. :::::: ..: :.. : . . :.: .::. NP_001 DLYSGWLAAALGTNLQVQFWHKTVGILPSNCSDIWQVLNVNQIAFPGPAGPSFNSTEDHS 240 250 260 270 280 290 100 110 120 130 140 150 pF1KE5 KWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK :::.: :: :::.::.::. . :.:: .:.: ...::: :: :. : NP_001 KWCVSPKGP---WTCVGDMNRNQGEEQRGGGTLCAQLPALWKAFQPLVKNYQPCNGMARK 300 310 320 330 340 350 NP_001 PSRAYKI 360 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:34:55 2016 done: Tue Nov 8 04:34:55 2016 Total Scan time: 4.270 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]