FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6359, 395 aa
  1>>>pF1KE6359 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5265+/-0.00089; mu= 14.9444+/- 0.054
 mean_var=61.1507+/-12.152, 0's: 0 Z-trim(105.5): 27  B-trim: 425 in 1/48
 Lambda= 0.164011
 statistics sampled from 8439 (8443) to 8439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.259), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS674.1 PIGK gene_id:10026|Hs108|chr1            ( 395) 2640 633.3 1.1e-181
CCDS9904.1 LGMN gene_id:5641|Hs108|chr14           ( 433)  374 97.2 3.1e-20


>>CCDS674.1 PIGK gene_id:10026|Hs108|chr1                 (395 aa)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 3375.2  bits: 633.3 E(32554): 1.1e-181
Smith-Waterman score: 2640; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE6 MAVTDSLSRAATVLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAVTDSLSRAATVLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 HVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 YRSYEVTVENFLRVLTGRIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YRSYEVTVENFLRVLTGRIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 IGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKNVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKNVLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 TDFFGSVRKVEITTETIKLQQDSEIMESSYKEDQMDEKLMEPLKYAEQLPVAQIIHQKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TDFFGSVRKVEITTETIKLQQDSEIMESSYKEDQMDEKLMEPLKYAEQLPVAQIIHQKPK
              310       320       330       340       350       360

              370       380       390     
pF1KE6 LKDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF
       :::::::::::::::::::::::::::::::::::
CCDS67 LKDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF
              370       380       390     

>>CCDS9904.1 LGMN gene_id:5641|Hs108|chr14                (433 aa)
 initn: 216 init1: 170 opt: 374  Z-score: 476.8  bits: 97.2 E(32554): 3.1e-20
Smith-Waterman score: 374; 31.0% identity (65.3% similar) in 245 aa overlap (14-255:5-239)

               10        20        30        40        50        60
pF1KE6 MAVTDSLSRAATVLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYR
                    .:. : ...: ..:  :.:  .    .:  ..:.:.:  :  :.:::
CCDS99          MVWKVAVFLSVALG-IGAVPIDDPED----GG--KHWVVIVAGSNGWYNYR
                        10         20              30        40    

               70        80        90       100       110       120
pF1KE6 HVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVD
       : :..  .:. ..: :::: .::.:. ::.: .  :: :. :... :   .:: . :  :
CCDS99 HQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGT-DVY-QGVPKD
           50        60        70        80        90         100  

              130       140         150       160       170        
pF1KE6 YRSYEVTVENFLRVLTGRIPP--STPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEI
       : . .:: .::: :: :      .   .: : :  .....::.: ::..:.: : . :..
CCDS99 YTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPN-EDL
            110       120       130       140       150        160 

      180       190       200       210        220       230       
pF1KE6 TNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP-NIMALASSQVGEDSLSHQP
          .: .... :.... : ...: :..:...::.... .  :..: ....  :.: .   
CCDS99 HVKDLNETIHYMYKHKMYRKMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYY
             170       180       190       200       210       220 

       240       250       260       270       280       290       
pF1KE6 DPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKN
       :   ...: : :.   .:                                          
CCDS99 DEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVM
             230       240       250       260       270       280 




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:26:42 2016 done: Tue Nov  8 12:26:42 2016
 Total Scan time:  1.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]