FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2228, 259 aa
  1>>>pF1KE2228 259 - 259 aa - 259 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9855+/-0.000382; mu= 12.0399+/- 0.024
 mean_var=85.7042+/-17.257, 0's: 0 Z-trim(113.6): 12  B-trim: 712 in 1/51
 Lambda= 0.138539
 statistics sampled from 22985 (22997) to 22985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.27), width:  16
 Scan time:  6.580

The best scores are:                                      opt bits E(85289)
XP_006710410 (OMIM: 611245) PREDICTED: tRNA wybuto ( 259) 1725 354.5 1.1e-97
NP_612476 (OMIM: 611245) tRNA wybutosine-synthesiz ( 259) 1725 354.5 1.1e-97
NP_001156388 (OMIM: 611245) tRNA wybutosine-synthe ( 226)  932 195.9 5.2e-50


>>XP_006710410 (OMIM: 611245) PREDICTED: tRNA wybutosine  (259 aa)
 initn: 1725 init1: 1725 opt: 1725  Z-score: 1874.6  bits: 354.5 E(85289): 1.1e-97
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
              190       200       210       220       230       240

              250         
pF1KE2 ENDDDDDLGINVTIFPEDY
       :::::::::::::::::::
XP_006 ENDDDDDLGINVTIFPEDY
              250         

>>NP_612476 (OMIM: 611245) tRNA wybutosine-synthesizing   (259 aa)
 initn: 1725 init1: 1725 opt: 1725  Z-score: 1874.6  bits: 354.5 E(85289): 1.1e-97
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
              190       200       210       220       230       240

              250         
pF1KE2 ENDDDDDLGINVTIFPEDY
       :::::::::::::::::::
NP_612 ENDDDDDLGINVTIFPEDY
              250         

>>NP_001156388 (OMIM: 611245) tRNA wybutosine-synthesizi  (226 aa)
 initn: 928 init1: 928 opt: 932  Z-score: 1018.9  bits: 195.9 E(85289): 5.2e-50
Smith-Waterman score: 1435; 87.3% identity (87.3% similar) in 259 aa overlap (1-259:1-226)

               10        20        30        40        50        60
pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
       :::::::::::::::::::::::::                                 ::
NP_001 NGFEVQKQNCCWLLVTHKLCVKDDV---------------------------------HS
               70        80                                        

              130       140       150       160       170       180
pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
        90       100       110       120       130       140       

              190       200       210       220       230       240
pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       150       160       170       180       190       200       

              250         
pF1KE2 ENDDDDDLGINVTIFPEDY
       :::::::::::::::::::
NP_001 ENDDDDDLGINVTIFPEDY
       210       220      




259 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:15:35 2016 done: Sun Nov  6 19:15:36 2016
 Total Scan time:  6.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]